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SNHG3 small nucleolar RNA host gene 3 [ Homo sapiens (human) ]

Gene ID: 8420, updated on 22-Feb-2020

Summary

Official Symbol
SNHG3provided by HGNC
Official Full Name
small nucleolar RNA host gene 3provided by HGNC
Primary source
HGNC:HGNC:10118
See related
Ensembl:ENSG00000242125 MIM:603238
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
U17HG; RNU17C; RNU17D; U17HG-A; U17HG-AB; NCRNA00014
Expression
Ubiquitous expression in bone marrow (RPKM 18.7), appendix (RPKM 11.0) and 24 other tissues See more

Genomic context

See SNHG3 in Genome Data Viewer
Location:
1p35.3
Exon count:
4
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (28505943..28510892)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (28832455..28837404)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 70 Neighboring gene phosphatase and actin regulator 4 Neighboring gene RNA, U6atac small nuclear 27, pseudogene Neighboring gene small nucleolar RNA, H/ACA box 73A Neighboring gene small nucleolar RNA, H/ACA box 73B Neighboring gene regulator of chromosome condensation 1 Neighboring gene peroxiredoxin 3 pseudogene 2 Neighboring gene Sharpr-MPRA regulatory region 11844 Neighboring gene tRNA selenocysteine 1 associated protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Readthrough RCC1

Readthrough gene: RCC1

Other Names

  • U17 small nucleolar RNA host
  • small nucleolar RNA host gene (non-protein coding) 3
  • small nucleolar RNA host gene 3 (non-protein coding)

Clone Names

  • FLJ18619

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002909.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon, compared to variant 1.
    Source sequence(s)
    AJ006835, AL513497
    Related
    ENST00000413987.1
  2. NR_036473.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AJ006835, AL513497, DA135739

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    28505943..28510892
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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