TAF15 TBP-associated factor 15 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Gene symbol: TAF15
Gene description: TBP-associated factor 15
Primary source: Araport:AT1G50300
Locus tag: AT1G50300
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F14I3.10; F14I3_10; TBP-associated factor 15
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Genomic context

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Location:: chromosome: 1

Exon count:: 8

Sequence:: Chromosome: 1; NC_003070.9 (18628555..18632039, complement)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001333430.1

Supported by ESTs:

NM_103914.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: TBP-associated factor 15

NP_564565.1

TBP-associated factor 15 (TAF15); FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: TBP-associated factor 15B (TAIR:AT5G58470.2); Has 11021 Blast hits to 6677 proteins in 384 species: Archae - 8; Bacteria - 254; Metazoa - 5533; Fungi - 1360; Plants - 1875; Viruses - 14; Other Eukaryotes - 1977 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

18628555..18632039 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_103914.3 → NP_564565.1 TBP-associated factor 15 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_564565.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9AST1, Q9SX47

UniProtKB/TrEMBL

A0A178W8T4

Conserved Domains (4) summary

smart00547
Location:205 → 228

ZnF_RBZ; Zinc finger domain

COG0724
Location:7 → 97

RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

cd12534
Location:10 → 92

RRM_SARFH; RNA recognition motif in Drosophila melanogaster RNA-binding protein cabeza and similar proteins

sd00029
Location:139 → 160

zf-RanBP2; RanBP2-type Zn finger [structural motif]
NM_001333430.1 → NP_001321763.1 TBP-associated factor 15 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8ARX2