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AT1G30730 FAD-binding Berberine family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839953, updated on 18-Apr-2019

Summary

Gene symbol
AT1G30730
Gene description
FAD-binding Berberine family protein
Primary source
Araport:AT1G30730
Locus tag
AT1G30730
Gene type
protein coding
RNA name
FAD-binding Berberine family protein
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T5I8.18; T5I8_18

Genomic context

See AT1G30730 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (10900681..10902626)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene FAD-binding Berberine family protein Neighboring gene FAD-binding Berberine family protein Neighboring gene FAD-binding Berberine family protein Neighboring gene TPRXL

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

NM_102809.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
FAD binding IEA
Inferred from Electronic Annotation
more info
 
electron transfer activity ISS
Inferred from Sequence or Structural Similarity
more info
 
oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
oxidation-reduction process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm ISM
Inferred from Sequence Model
more info
 
extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
FAD-binding Berberine family protein
NP_174360.1
  • FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G30720.1); Has 4813 Blast hits to 4783 proteins in 792 species: Archae - 53; Bacteria - 2083; Metazoa - 8; Fungi - 1639; Plants - 818; Viruses - 0; Other Eukaryotes - 212 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    10900681..10902626
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102809.3NP_174360.1  FAD-binding Berberine family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174360.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SA88
    Conserved Domains (3) summary
    COG0277
    Location:76278
    GlcD; FAD/FMN-containing dehydrogenase [Energy production and conversion]
    pfam01565
    Location:76209
    FAD_binding_4; FAD binding domain
    pfam08031
    Location:468523
    BBE; Berberine and berberine like
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