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AT1G30700 FAD-binding Berberine family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839950, updated on 15-Feb-2024

Summary

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Gene symbol
AT1G30700
Gene description
FAD-binding Berberine family protein
Primary source
Araport:AT1G30700
Locus tag
AT1G30700
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T5I8.15; T5I8_15
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (10892445..10894714)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene toprim domain-containing protein Neighboring gene Sec14p-like phosphatidylinositol transfer family protein Neighboring gene FAD-binding Berberine family protein Neighboring gene FAD-binding Berberine family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_102806.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables FAD binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in plant-type cell wall ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
FAD-binding Berberine family protein
NP_174357.1
  • FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: stem, hypocotyl, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G30710.1); Has 4734 Blast hits to 4686 proteins in 819 species: Archae - 47; Bacteria - 2248; Metazoa - 0; Fungi - 1602; Plants - 666; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    10892445..10894714
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102806.3 → NP_174357.1  FAD-binding Berberine family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174357.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SA85
    UniProtKB/TrEMBL
    A0A178W3V5, A0A5S9WF02, A0A7G2DU91
    Conserved Domains (3) summary
    pfam08031
    Location:465 → 524
    BBE; Berberine and berberine like
    pfam01565
    Location:75 → 214
    FAD_binding_4; FAD binding domain
    cl40730
    Location:75 → 526
    GlcD; FAD/FMN-containing dehydrogenase [Energy production and conversion]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SA85.1

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