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AT1G27470 transducin family protein / WD-40 repeat family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839638, updated on 28-Mar-2017
Gene symbol
AT1G27470
Gene description
transducin family protein / WD-40 repeat family protein
Primary source
Araport:AT1G27470
Locus tag
AT1G27470
Gene type
protein coding
RNA name
transducin family protein / WD-40 repeat family protein
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17L21.26; F17L21_26
See AT1G27470 in Map Viewer
Location:
chromosome: 1
Exon count:
11
Sequence:
Chromosome: 1; NC_003070.9 (9540049..9544303, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene no pollen germination related 1 Neighboring gene hypothetical protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene F-box and associated interaction domains-containing protein

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Homology

NM_102511.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
nucleotide binding ISS
Inferred from Sequence or Structural Similarity
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
nucleus ISM
Inferred from Sequence Model
more info
 
Names
transducin family protein / WD-40 repeat family protein
NP_174067.2
  • transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT4G07410.1); Has 9350 Blast hits to 6259 proteins in 471 species: Archae - 14; Bacteria - 2955; Metazoa - 2262; Fungi - 2287; Plants - 792; Viruses - 0; Other Eukaryotes - 1040 (source: NCBI BLink).

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9540049..9544303 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102511.4NP_174067.2  transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174067.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8VYS4
    Conserved Domains (3) summary
    COG2319
    Location:14416
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:255286
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:14317
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
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