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AT1G01210 DNA-directed RNA polymerase, subunit M, archaeal [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839481, updated on 15-Oct-2023

Summary

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Gene symbol
AT1G01210
Gene description
DNA-directed RNA polymerase, subunit M, archaeal
Primary source
Araport:AT1G01210
Locus tag
AT1G01210
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F6F3.2; F6F3_2
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (88622..90502)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 78, subfamily A, polypeptide 8 Neighboring gene RAB GTPase homolog A3 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene L-fucokinase/GDP-L-fucose pyrophosphorylase Neighboring gene NC domain-containing protein-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
  2. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_100003.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DNA-directed RNA polymerase, subunit M, archaeal
NP_171629.1
  • DNA-directed RNA polymerase, subunit M, archaeal; FUNCTIONS IN: in 6 functions; INVOLVED IN: RNA elongation, regulation of transcription, DNA-dependent, transcription, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Zinc finger, TFIIS-type (InterPro:IPR001222), DNA-directed RNA polymerase, M/15kDa subunit (InterPro:IPR001529), DNA-directed RNA polymerase, subunit M, archaeal (InterPro:IPR006288), DNA-directed RNA polymerase M, 15kDa subunit, conserved site (InterPro:IPR019761); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase, subunit M, archaeal (TAIR:AT4G07950.1); Has 1129 Blast hits to 1129 proteins in 326 species: Archae - 242; Bacteria - 0; Metazoa - 276; Fungi - 294; Plants - 112; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    88622..90502
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001331254.1 → NP_001322609.1  DNA-directed RNA polymerase, subunit M, archaeal [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W0Q7, A0A384LJI7, A0A5S9S1K6, Q9LNK0
    Conserved Domains (1) summary
    COG1594
    Location:1 → 105
    RPB9; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]

  2. NM_001331255.1 → NP_001322610.1  DNA-directed RNA polymerase, subunit M, archaeal [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W0Q7, A0A384LJI7, A0A5S9S1K6, Q9LNK0
    Conserved Domains (1) summary
    COG1594
    Location:1 → 105
    RPB9; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]

  3. NM_100003.3 → NP_171629.1  DNA-directed RNA polymerase, subunit M, archaeal [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_171629.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W0Q7, A0A384LJI7, A0A5S9S1K6, Q9LNK0
    Conserved Domains (1) summary
    COG1594
    Location:1 → 105
    RPB9; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
Nucleotide Protein
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