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AT1G04040 HAD superfamily, subfamily IIIB acid phosphatase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839325, updated on 6-Apr-2018

Summary

Gene symbol
AT1G04040
Gene description
HAD superfamily, subfamily IIIB acid phosphatase
Primary source
Araport:AT1G04040
Locus tag
AT1G04040
Gene type
protein coding
RNA name
HAD superfamily, subfamily IIIB acid phosphatase
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F21M11.2; F21M11_2

Genomic context

See AT1G04040 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (1042362..1043887, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene phospholipid sterol acyl transferase 1 Neighboring gene breast cancer associated RING 1 Neighboring gene eisosome protein Neighboring gene ncRNA Neighboring gene histone-lysine N-methyltransferase SUVR2-like protein Neighboring gene translocase of outer membrane 22-I

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • phosphate acquisition, organism-specific biosystem (from BIOCYC)
    phosphate acquisition, organism-specific biosystemGeneral Background Plant growth and development requires macro and micronutrients, some of which are available only from external sources like the soil in which they grow. Phosphorous is one such es...

General gene information

NM_100285.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
acid phosphatase activity IEA
Inferred from Electronic Annotation
more info
 
acid phosphatase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
cell wall IDA
Inferred from Direct Assay
more info
PubMed 
plant-type cell wall IDA
Inferred from Direct Assay
more info
PubMed 
plasmodesma IDA
Inferred from Direct Assay
more info
PubMed 
vacuolar membrane IDA
Inferred from Direct Assay
more info
PubMed 
vacuole IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
HAD superfamily, subfamily IIIB acid phosphatase
NP_563698.1
  • HAD superfamily, subfamily IIIB acid phosphatase; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: HAD superfamily, subfamily IIIB acid phosphatase (TAIR:AT5G44020.1); Has 1079 Blast hits to 1077 proteins in 335 species: Archae - 0; Bacteria - 592; Metazoa - 2; Fungi - 0; Plants - 364; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    1042362..1043887 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100285.4NP_563698.1  HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563698.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WEF3, Q9ZWC4
    Conserved Domains (1) summary
    TIGR01675
    Location:40271
    plant-AP; plant acid phosphatase
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