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Cpn60beta4 TCP-1/cpn60 chaperonin family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839164, updated on 11-Oct-2018

Summary

Gene symbol
Cpn60beta4
Gene description
TCP-1/cpn60 chaperonin family protein
Primary source
Araport:AT1G26230
Locus tag
AT1G26230
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
chaperonin-60beta4; F28B23.11; F28B23_11
Summary
Encodes a subunit of chloroplasts chaperonins that are involved in mediating the folding of newly synthesized, translocated, or stress-denatured proteins. Cpn60 subunits are: Cpn60alpha1 (At2g28000), AtCpn60alpha2 (At5g18820), AtCpn60beta1 (At1g55490), AtCpn60beta2 (At3g13470), AtCpn60beta3 (At5g56500), AtCpn60beta4 (At1g26230).

Genomic context

See Cpn60beta4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Sequence:
Chromosome: 1; NC_003070.9 (9072256..9075350, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Acyl-CoA N-acyltransferases (NAT) superfamily protein Neighboring gene hypothetical protein Neighboring gene ncRNA Neighboring gene ncRNA

Pathways from BioSystems

  • RNA degradation, organism-specific biosystem (from KEGG)
    RNA degradation, organism-specific biosystemThe correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay e...
  • RNA degradation, conserved biosystem (from KEGG)
    RNA degradation, conserved biosystemThe correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay e...

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_001332699.1
NM_001332701.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
unfolded protein binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
'de novo' protein folding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein folding IMP
Inferred from Mutant Phenotype
more info
PubMed 
protein refolding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
chloroplast IDA
Inferred from Direct Assay
more info
PubMed 
chloroplast ISM
Inferred from Sequence Model
more info
 
chloroplast envelope IDA
Inferred from Direct Assay
more info
PubMed 
chloroplast stroma IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoplasm ISM
Inferred from Sequence Model
more info
 
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
TCP-1/cpn60 chaperonin family protein
NP_001319083.1
  • TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein refolding, cellular protein metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: chaperonin 60 beta (TAIR:AT1G55490.2).
NP_173947.1
  • TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein refolding, cellular protein metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: chaperonin 60 beta (TAIR:AT1G55490.2); Has 34077 Blast hits to 34022 proteins in 8740 species: Archae - 776; Bacteria - 21861; Metazoa - 1711; Fungi - 1609; Plants - 849; Viruses - 2; Other Eukaryotes - 7269 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9072256..9075350 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102387.3NP_173947.1  TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173947.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9C667
    UniProtKB/TrEMBL
    A0A178WH16
    Conserved Domains (2) summary
    PTZ00114
    Location:35570
    PTZ00114; Heat shock protein 60; Provisional
    cl02777
    Location:1576
    chaperonin_like; chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I ...
  2. NM_001332700.1NP_001322215.1  TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ATA4
  3. NM_001198168.2NP_001185097.1  TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185097.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9C667
    Conserved Domains (2) summary
    PTZ00114
    Location:5518
    PTZ00114; Heat shock protein 60; Provisional
    cl02777
    Location:3524
    chaperonin_like; chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I ...
  4. NM_001332699.1NP_001319083.1  TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A2H1ZEC4
  5. NM_001332701.1NP_001322216.1  TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ATB3
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