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OVA9 glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839120, updated on 11-Oct-2018

Summary

Gene symbol
OVA9
Gene description
glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS
Primary source
Araport:AT1G25350
Locus tag
AT1G25350
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F4F7.26; F4F7_26; ovule abortion 9

Genomic context

See OVA9 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
22
Sequence:
Chromosome: 1; NC_003070.9 (8889018..8894306, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene myb domain protein 116 Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene hypothetical protein (DUF1639)

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

NM_001198165.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
glutamine-tRNA ligase activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Process Evidence Code Pubs
glutaminyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 
glutamyl-tRNA aminoacylation ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
plant ovule development IMP
Inferred from Mutant Phenotype
more info
PubMed 
translation TAS
Traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
cytoplasm ISM
Inferred from Sequence Model
more info
 
cytosol IDA
Inferred from Direct Assay
more info
PubMed 
cytosol ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 

General protein information

Preferred Names
glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS
NP_001185094.1
  • ovule abortion 9 (OVA9); CONTAINS InterPro DOMAIN/s: Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain (InterPro:IPR020056), Glutamyl/glutaminyl-tRNA synthetase, class Ic, alpha-bundle domain (InterPro:IPR020061), Glutaminyl-tRNA synthetase, class Ic, non-specific RNA-binding region part 1 (InterPro:IPR007639), Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (InterPro:IPR011035), Glutaminyl-tRNA synthetase, class Ic, non-specific RNA-binding region part 2 (InterPro:IPR007638), Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain (InterPro:IPR020058), Glutamyl/glutaminyl-tRNA synthetase, class Ic (InterPro:IPR000924), Glutaminyl-tRNA synthetase, class Ic (InterPro:IPR004514), Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain (InterPro:IPR020059); BEST Arabidopsis thaliana protein match is: Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (TAIR:AT5G19720.1).
NP_173906.2
  • ovule abortion 9 (OVA9); FUNCTIONS IN: glutamine-tRNA ligase activity; INVOLVED IN: glutamyl-tRNA aminoacylation, translation, ovule development; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Glutamyl/glutaminyl-tRNA synthetase, class Ic, alpha-bundle domain (InterPro:IPR020061), Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain (InterPro:IPR020056), Glutaminyl-tRNA synthetase, class Ic, non-specific RNA-binding region part 1 (InterPro:IPR007639), Glutamyl/glutaminyl-tRNA synthetase, class Ic, N-terminal (InterPro:IPR020060), Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (InterPro:IPR011035), Glutaminyl-tRNA synthetase, class Ic, non-specific RNA-binding region part 2 (InterPro:IPR007638), Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain (InterPro:IPR020058), Glutamyl/glutaminyl-tRNA synthetase, class Ic (InterPro:IPR000924), Glutaminyl-tRNA synthetase, class Ic (InterPro:IPR004514), Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain (InterPro:IPR020059); BEST Arabidopsis thaliana protein match is: Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (TAIR:AT5G19720.1); Has 13124 Blast hits to 13109 proteins in 2954 species: Archae - 262; Bacteria - 8524; Metazoa - 443; Fungi - 410; Plants - 177; Viruses - 0; Other Eukaryotes - 3308 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    8889018..8894306 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102345.4NP_173906.2  glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173906.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8W4F3
    UniProtKB/TrEMBL
    A0A178WCP2
    Conserved Domains (5) summary
    PLN02859
    Location:4795
    PLN02859; glutamine-tRNA ligase
    pfam03950
    Location:578770
    tRNA-synt_1c_C; tRNA synthetases class I (E and Q), anti-codon binding domain
    pfam04557
    Location:170263
    tRNA_synt_1c_R2; Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2
    pfam04558
    Location:15167
    tRNA_synt_1c_R1; Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1
    cl00015
    Location:270575
    nt_trans; nucleotidyl transferase superfamily
  2. NM_001198165.1NP_001185094.1  glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185094.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4ICG2
    Conserved Domains (5) summary
    PLN02859
    Location:4800
    PLN02859; glutamine-tRNA ligase
    pfam03950
    Location:583775
    tRNA-synt_1c_C; tRNA synthetases class I (E and Q), anti-codon binding domain
    pfam04557
    Location:170263
    tRNA_synt_1c_R2; Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2
    pfam04558
    Location:15167
    tRNA_synt_1c_R1; Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1
    cl00015
    Location:270580
    nt_trans; nucleotidyl transferase superfamily
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