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SPATA16 spermatogenesis associated 16 [ Homo sapiens (human) ]

Gene ID: 83893, updated on 23-Nov-2021

Summary

Official Symbol
SPATA16provided by HGNC
Official Full Name
spermatogenesis associated 16provided by HGNC
Primary source
HGNC:HGNC:29935
See related
Ensembl:ENSG00000144962 MIM:609856
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SPGF6; NYD-SP12
Summary
This gene encodes a testis-specific protein that belongs to the tetratricopeptide repeat-like superfamily. The encoded protein localizes to the Golgi apparatus and may play a role in spermatogenesis. [provided by RefSeq, May 2010]
Expression
Restricted expression toward testis (RPKM 29.2) See more
Orthologs
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Genomic context

See SPATA16 in Genome Data Viewer
Location:
3q26.31
Exon count:
13
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (172889357..173141235, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (172607147..172859025, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986052 Neighboring gene ATP synthase membrane subunit c locus 1 pseudogene 4 Neighboring gene epithelial cell transforming 2 Neighboring gene uncharacterized LOC105374221 Neighboring gene uncharacterized LOC105374220 Neighboring gene uncharacterized LOC105374224 Neighboring gene neuroligin 1 Neighboring gene transmembrane protein 229B-like

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

Associated conditions

Description Tests
A genome-wide association meta-analysis of preschool internalizing problems.
GeneReviews: Not available
A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.
GeneReviews: Not available
Globozoospermia
MedGen: C0403825 OMIM: 102530 GeneReviews: Not available
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Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in spermatogenesis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
spermatogenesis-associated protein 16
Names
testicular tissue protein Li 185
testis development protein NYD-SP12
testis-specific Golgi protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_021422.1 RefSeqGene

    Range
    5034..256912
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_031955.6NP_114161.3  spermatogenesis-associated protein 16

    See identical proteins and their annotated locations for NP_114161.3

    Status: REVIEWED

    Source sequence(s)
    AC063933, BC034496, BI829426
    Consensus CDS
    CCDS3221.1
    UniProtKB/Swiss-Prot
    Q9BXB7
    UniProtKB/TrEMBL
    A0A140VJV8
    Related
    ENSP00000341765.3, ENST00000351008.4
    Conserved Domains (2) summary
    sd00006
    Location:217257
    TPR; TPR repeat [structural motif]
    pfam15015
    Location:6567
    NYD-SP12_N; Spermatogenesis-associated, N-terminal

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    172889357..173141235 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006713778.3XP_006713841.1  spermatogenesis-associated protein 16 isoform X1

    Conserved Domains (2) summary
    sd00006
    Location:217257
    TPR; TPR repeat [structural motif]
    pfam15015
    Location:6529
    NYD-SP12_N; Spermatogenesis-associated, N-terminal
  2. XM_017007308.2XP_016862797.1  spermatogenesis-associated protein 16 isoform X2

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