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PEPC1 Pyridoxal phosphate phosphatase-related protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838347, updated on 1-May-2018

Summary

Gene symbol
PEPC1
Gene description
Pyridoxal phosphate phosphatase-related protein
Primary source
Araport:AT1G17710
Locus tag
AT1G17710
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1; AtPEPC1; F11A6.5; F11A6_5; phosphoethanolamine/phosphocholine phosphatase 1
Summary
Encodes a phosphoethanolamine/phosphocholine phosphatase. It is likely to be involved in the liberation of inorganic phosphate from intracellular sources. Expression is upregulated in the shoot of cax1/cax3 mutant.

Genomic context

See PEPC1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (6090405..6092027, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene U3 small nucleolar RNA-associated protein Neighboring gene prenylated RAB acceptor 1.F1 Neighboring gene Protein phosphatase 2A, regulatory subunit PR55 Neighboring gene vacuolar protein sorting 46.1

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General gene information

Homology

NM_001084087.1
NM_101633.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
phosphocholine phosphatase activity IDA
Inferred from Direct Assay
more info
PubMed 
phosphoethanolamine phosphatase activity IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
dephosphorylation IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
Pyridoxal phosphate phosphatase-related protein
NP_001077556.1
  • Pyridoxal phosphate phosphatase-related protein; FUNCTIONS IN: phosphatase activity; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate phosphatase-related (InterPro:IPR006384); BEST Arabidopsis thaliana protein match is: phosphate starvation-induced gene 2 (TAIR:AT1G73010.1); Has 346 Blast hits to 336 proteins in 99 species: Archae - 0; Bacteria - 6; Metazoa - 176; Fungi - 16; Plants - 103; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
NP_173213.2
  • Pyridoxal phosphate phosphatase-related protein; FUNCTIONS IN: phosphatase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate phosphatase, PHOSPHO2 (InterPro:IPR016965), HAD-superfamily hydrolase, subfamily IB, PSPase-like (InterPro:IPR006383), Pyridoxal phosphate phosphatase-related (InterPro:IPR006384); BEST Arabidopsis thaliana protein match is: phosphate starvation-induced gene 2 (TAIR:AT1G73010.1); Has 360 Blast hits to 348 proteins in 105 species: Archae - 0; Bacteria - 18; Metazoa - 175; Fungi - 16; Plants - 106; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    6090405..6092027 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101633.4NP_173213.2  Pyridoxal phosphate phosphatase-related protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173213.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FZ62
    Conserved Domains (2) summary
    COG0546
    Location:8120
    Gph; Phosphoglycolate phosphatase, HAD superfamily [Energy production and conversion]
    pfam06888
    Location:7239
    Put_Phosphatase; Putative Phosphatase
  2. NM_001084087.1NP_001077556.1  Pyridoxal phosphate phosphatase-related protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077556.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FZ62
    Conserved Domains (2) summary
    pfam00702
    Location:29154
    Hydrolase; haloacid dehalogenase-like hydrolase
    cl21460
    Location:19207
    HAD_like; Haloacid Dehalogenase-like Hydrolases
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