Vegfa vascular endothelial growth factor A [ Rattus norvegicus (Norway rat) ]

Gene ID: 83785, updated on 10-Jan-2021

Summary

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Official Symbol: Vegfaprovided by RGD
Official Full Name: vascular endothelial growth factor Aprovided by RGD
Primary source: RGD:619991
See related: Ensembl:ENSRNOG00000019598
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: VPF; Vegf; VEGF-A; VEGF111; VEGF164
Summary: This gene is a member of the PDGF/VEGF growth factor family. It encodes a heparin-binding protein, which exists as a disulfide-linked homodimer. This growth factor induces proliferation and migration of vascular endothelial cells, and is essential for both physiological and pathological angiogenesis. Disruption of this gene in mice resulted in abnormal embryonic blood vessel formation. This gene is upregulated in many known tumors and its expression is correlated with tumor stage and progression. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. There is also evidence for alternative translation initiation from upstream non-AUG (CUG) codons resulting in additional isoforms. A recent study showed that a C-terminally extended isoform is produced by use of an alternative in-frame translation termination codon via a stop codon readthrough mechanism, and that this isoform is antiangiogenic. Expression of some isoforms derived from the AUG start codon is regulated by a small upstream open reading frame, which is located within an internal ribosome entry site. [provided by RefSeq, Nov 2015]
Expression: Biased expression in Lung (RPKM 1035.8), Heart (RPKM 646.4) and 8 other tissues See more
Orthologs: human mouse all
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Genomic context

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See Vegfa in Genome Data Viewer

Location:: 9q12

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
106	current	Rnor_6.0 (GCF_000001895.5)	9	NC_005108.4 (17340341..17355681)
106	current	Rn_Celera (GCF_000002265.2)	9	AC_000077.1 (12701425..12716765)
104	previous assembly	Rnor_5.0 (GCF_000001895.4)	9	NC_005108.3 (16232415..16247658)

Chromosome 9 - NC_005108.4 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Effect of continuous compressive force on the expression of RANKL, OPG, and VEGF in osteocytes.
Title: Effect of continuous compressive force on the expression of RANKL, OPG, and VEGF in osteocytes.
Sources and lesion-induced changes of VEGF expression in brainstem motoneurons.
Title: Sources and lesion-induced changes of VEGF expression in brainstem motoneurons.
VEGF is an autocrine/paracrine neuroprotective factor for injured retinal ganglion neurons.
Title: VEGF is an autocrine/paracrine neuroprotective factor for injured retinal ganglion neurons.
PDLSCs Regulate Angiogenesis of Periodontal Ligaments via VEGF Transferred by Exosomes in Periodontitis.
Title: PDLSCs Regulate Angiogenesis of Periodontal Ligaments via VEGF Transferred by Exosomes in Periodontitis.
CD93 hematopoietic stem cells improve diabetic wound healing by VEGF activation and downregulation of DAPK-1.
Title: CD93 hematopoietic stem cells improve diabetic wound healing by VEGF activation and downregulation of DAPK-1.
Adipose-derived stem cells promote diabetic wound healing via the recruitment and differentiation of endothelial progenitor cells into endothelial cells mediated by the VEGF-PLCgamma-ERK pathway.
Title: Adipose-derived stem cells promote diabetic wound healing via the recruitment and differentiation of endothelial progenitor cells into endothelial cells mediated by the VEGF-PLCγ-ERK pathway.
VEGF and bFGF induction by nitric oxide is associated with hyperbaric oxygen-induced angiogenesis and muscle regeneration.
Title: VEGF and bFGF induction by nitric oxide is associated with hyperbaric oxygen-induced angiogenesis and muscle regeneration.
VEGF mediates fat embolism-induced acute lung injury via VEGF receptor 2 and the MAPK cascade.
Title: VEGF mediates fat embolism-induced acute lung injury via VEGF receptor 2 and the MAPK cascade.
Enhancement of sciatic nerve regeneration with dual delivery of vascular endothelial growth factor and nerve growth factor genes.
Title: Enhancement of sciatic nerve regeneration with dual delivery of vascular endothelial growth factor and nerve growth factor genes.
Adventitial fibroblast-derived vascular endothelial growth factor promotes vasa vasorum-associated neointima formation and macrophage recruitment.
Title: Adventitial fibroblast-derived vascular endothelial growth factor promotes vasa vasorum-associated neointima formation and macrophage recruitment.

Submit: New GeneRIF Correction See all GeneRIFs (572)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

Vegfa (e-PCR), detects polymorphism
- UniSTS:471318

Vegfa (e-PCR), detects polymorphism
- UniSTS:462632

PMC20712P1 (e-PCR)
- UniSTS:271944

VEGF_1127 (e-PCR)
- UniSTS:277860

VEGF_V308 (e-PCR)
- UniSTS:277860

Vegf (e-PCR), detects polymorphism
- UniSTS:144751

Vegf (e-PCR), detects polymorphism
- UniSTS:181878

D2Wox60 (e-PCR)
- UniSTS:240057

D2Wox61 (e-PCR)
- UniSTS:240058

Homology

Homologs of the Vegfa gene: The Vegfa gene is conserved in human, dog, cow, mouse, chicken, and zebrafish.
Orthologs from Annotation Pipeline: 260 organisms have orthologs with human gene Vegfa
Orthologs

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
chemoattractant activity	IBA Inferred from Biological aspect of Ancestor more info	PubMed
chemoattractant activity	IMP Inferred from Mutant Phenotype more info	PubMed
chemoattractant activity	ISO Inferred from Sequence Orthology more info
cytokine activity	ISO Inferred from Sequence Orthology more info
extracellular matrix binding	ISO Inferred from Sequence Orthology more info
fibronectin binding	ISO Inferred from Sequence Orthology more info
growth factor activity	IBA Inferred from Biological aspect of Ancestor more info	PubMed
growth factor activity	IDA Inferred from Direct Assay more info	PubMed
growth factor activity	IEA Inferred from Electronic Annotation more info
growth factor activity	ISO Inferred from Sequence Orthology more info
growth factor binding	IPI Inferred from Physical Interaction more info	PubMed
heparin binding	IEA Inferred from Electronic Annotation more info
heparin binding	ISO Inferred from Sequence Orthology more info
identical protein binding	IPI Inferred from Physical Interaction more info	PubMed
identical protein binding	ISO Inferred from Sequence Orthology more info
neuropilin binding	ISO Inferred from Sequence Orthology more info
platelet-derived growth factor receptor binding	ISO Inferred from Sequence Orthology more info
receptor ligand activity	ISO Inferred from Sequence Orthology more info
signaling receptor binding	ISO Inferred from Sequence Orthology more info
vascular endothelial growth factor receptor 1 binding	IBA Inferred from Biological aspect of Ancestor more info	PubMed
vascular endothelial growth factor receptor 1 binding	ISO Inferred from Sequence Orthology more info
vascular endothelial growth factor receptor 2 binding	IBA Inferred from Biological aspect of Ancestor more info	PubMed
vascular endothelial growth factor receptor 2 binding	IMP Inferred from Mutant Phenotype more info	PubMed
vascular endothelial growth factor receptor 2 binding	ISO Inferred from Sequence Orthology more info
vascular endothelial growth factor receptor binding	IBA Inferred from Biological aspect of Ancestor more info	PubMed
vascular endothelial growth factor receptor binding	ISO Inferred from Sequence Orthology more info
vascular endothelial growth factor receptor binding	TAS Traceable Author Statement more info	PubMed

Process	Evidence Code	Pubs
T-helper 1 type immune response	IDA Inferred from Direct Assay more info	PubMed
VEGF-activated neuropilin signaling pathway	ISO Inferred from Sequence Orthology more info
activation of protein kinase activity	ISO Inferred from Sequence Orthology more info
aging	IEP Inferred from Expression Pattern more info	PubMed
angiogenesis	IEA Inferred from Electronic Annotation more info
angiogenesis	IMP Inferred from Mutant Phenotype more info	PubMed
angiogenesis	ISO Inferred from Sequence Orthology more info
angiogenesis	TAS Traceable Author Statement more info	PubMed
angiogenesis involved in coronary vascular morphogenesis	IMP Inferred from Mutant Phenotype more info	PubMed
artery morphogenesis	ISO Inferred from Sequence Orthology more info
basophil chemotaxis	ISO Inferred from Sequence Orthology more info
blood vessel development	ISO Inferred from Sequence Orthology more info
blood vessel morphogenesis	ISO Inferred from Sequence Orthology more info
blood vessel remodeling	IMP Inferred from Mutant Phenotype more info	PubMed
bone trabecula formation	ISO Inferred from Sequence Orthology more info
bone trabecula morphogenesis	ISO Inferred from Sequence Orthology more info
branching involved in blood vessel morphogenesis	ISO Inferred from Sequence Orthology more info
branching morphogenesis of an epithelial tube	ISO Inferred from Sequence Orthology more info
camera-type eye morphogenesis	ISO Inferred from Sequence Orthology more info
cardiac muscle fiber development	ISO Inferred from Sequence Orthology more info
cardiac vascular smooth muscle cell development	ISO Inferred from Sequence Orthology more info
cell chemotaxis	IMP Inferred from Mutant Phenotype more info	PubMed
cell differentiation	IEA Inferred from Electronic Annotation more info
cell maturation	ISO Inferred from Sequence Orthology more info
cell migration	ISO Inferred from Sequence Orthology more info
cell migration involved in sprouting angiogenesis	ISO Inferred from Sequence Orthology more info
cell population proliferation	ISO Inferred from Sequence Orthology more info
cellular response to dexamethasone stimulus	IEP Inferred from Expression Pattern more info	PubMed
cellular response to drug	IEP Inferred from Expression Pattern more info	PubMed
cellular response to fibroblast growth factor stimulus	IEP Inferred from Expression Pattern more info	PubMed
cellular response to hypoxia	ISO Inferred from Sequence Orthology more info
cellular response to vascular endothelial growth factor stimulus	ISO Inferred from Sequence Orthology more info
cellular stress response to acid chemical	ISO Inferred from Sequence Orthology more info
commissural neuron axon guidance	ISO Inferred from Sequence Orthology more info
NOT commissural neuron axon guidance	ISO Inferred from Sequence Orthology more info
coronary artery morphogenesis	ISO Inferred from Sequence Orthology more info
coronary vein morphogenesis	ISO Inferred from Sequence Orthology more info
dopaminergic neuron differentiation	ISO Inferred from Sequence Orthology more info
endothelial cell chemotaxis	ISO Inferred from Sequence Orthology more info
endothelial cell migration	ISO Inferred from Sequence Orthology more info
epithelial cell differentiation	ISO Inferred from Sequence Orthology more info
eye photoreceptor cell development	ISO Inferred from Sequence Orthology more info
female pregnancy	IEP Inferred from Expression Pattern more info	PubMed
heart morphogenesis	ISO Inferred from Sequence Orthology more info
homeostasis of number of cells within a tissue	ISO Inferred from Sequence Orthology more info
hyaluronan metabolic process	IEP Inferred from Expression Pattern more info	PubMed
in utero embryonic development	ISO Inferred from Sequence Orthology more info
induction of positive chemotaxis	IBA Inferred from Biological aspect of Ancestor more info	PubMed
induction of positive chemotaxis	ISO Inferred from Sequence Orthology more info
kidney development	ISO Inferred from Sequence Orthology more info
lactation	ISO Inferred from Sequence Orthology more info
lung alveolus development	IMP Inferred from Mutant Phenotype more info	PubMed
lung development	ISO Inferred from Sequence Orthology more info
lung vasculature development	ISO Inferred from Sequence Orthology more info
lymph vessel morphogenesis	ISO Inferred from Sequence Orthology more info
lymphangiogenesis	ISO Inferred from Sequence Orthology more info
mRNA stabilization	IDA Inferred from Direct Assay more info	PubMed
macrophage differentiation	ISO Inferred from Sequence Orthology more info
mammary gland alveolus development	ISO Inferred from Sequence Orthology more info
mesoderm development	ISO Inferred from Sequence Orthology more info
monocyte differentiation	ISO Inferred from Sequence Orthology more info
motor neuron migration	ISO Inferred from Sequence Orthology more info
motor neuron migration	ISS Inferred from Sequence or Structural Similarity more info
negative regulation of adherens junction organization	ISO Inferred from Sequence Orthology more info
negative regulation of apoptotic process	ISO Inferred from Sequence Orthology more info
negative regulation of blood-brain barrier permeability	ISO Inferred from Sequence Orthology more info
negative regulation of bone resorption	IMP Inferred from Mutant Phenotype more info	PubMed
negative regulation of cell-cell adhesion	ISO Inferred from Sequence Orthology more info
negative regulation of cell-cell adhesion mediated by cadherin	ISO Inferred from Sequence Orthology more info
negative regulation of cysteine-type endopeptidase activity involved in apoptotic process	ISO Inferred from Sequence Orthology more info
negative regulation of epithelial to mesenchymal transition	ISO Inferred from Sequence Orthology more info
negative regulation of establishment of endothelial barrier	ISO Inferred from Sequence Orthology more info
negative regulation of extrinsic apoptotic signaling pathway	ISO Inferred from Sequence Orthology more info
negative regulation of fat cell differentiation	ISO Inferred from Sequence Orthology more info
negative regulation of gene expression	ISO Inferred from Sequence Orthology more info
negative regulation of neuron apoptotic process	ISO Inferred from Sequence Orthology more info
negative regulation of neuron death	IMP Inferred from Mutant Phenotype more info	PubMed
negative regulation of programmed cell death	IMP Inferred from Mutant Phenotype more info	PubMed
negative regulation of transcription by RNA polymerase II	ISO Inferred from Sequence Orthology more info
nervous system development	IDA Inferred from Direct Assay more info	PubMed
nervous system development	NAS Non-traceable Author Statement more info	PubMed
neuron development	ISO Inferred from Sequence Orthology more info
outflow tract morphogenesis	ISO Inferred from Sequence Orthology more info
ovarian follicle development	ISO Inferred from Sequence Orthology more info
positive chemotaxis	ISO Inferred from Sequence Orthology more info
positive regulation of CREB transcription factor activity	ISO Inferred from Sequence Orthology more info
positive regulation of DNA biosynthetic process	ISO Inferred from Sequence Orthology more info
positive regulation of ERK1 and ERK2 cascade	ISO Inferred from Sequence Orthology more info
positive regulation of MAP kinase activity	ISO Inferred from Sequence Orthology more info
positive regulation of MAPK cascade	ISO Inferred from Sequence Orthology more info
positive regulation of angiogenesis	IBA Inferred from Biological aspect of Ancestor more info	PubMed
positive regulation of angiogenesis	IDA Inferred from Direct Assay more info	PubMed
positive regulation of angiogenesis	ISO Inferred from Sequence Orthology more info
positive regulation of angiogenesis	ISS Inferred from Sequence or Structural Similarity more info
positive regulation of axon extension involved in axon guidance	ISO Inferred from Sequence Orthology more info
NOT positive regulation of axon extension involved in axon guidance	ISO Inferred from Sequence Orthology more info
positive regulation of blood vessel endothelial cell migration	ISO Inferred from Sequence Orthology more info
positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis	ISO Inferred from Sequence Orthology more info
positive regulation of branching involved in ureteric bud morphogenesis	ISO Inferred from Sequence Orthology more info
positive regulation of cell adhesion	ISO Inferred from Sequence Orthology more info
positive regulation of cell division	IEA Inferred from Electronic Annotation more info
positive regulation of cell migration	ISO Inferred from Sequence Orthology more info
positive regulation of cell migration by vascular endothelial growth factor signaling pathway	ISO Inferred from Sequence Orthology more info
positive regulation of cell migration involved in sprouting angiogenesis	ISO Inferred from Sequence Orthology more info
positive regulation of cell population proliferation	IMP Inferred from Mutant Phenotype more info	PubMed
positive regulation of cell population proliferation	ISO Inferred from Sequence Orthology more info
positive regulation of cell population proliferation	TAS Traceable Author Statement more info	PubMed
positive regulation of cell proliferation by VEGF-activated platelet derived growth factor receptor signaling pathway	ISO Inferred from Sequence Orthology more info
positive regulation of cellular component movement	ISO Inferred from Sequence Orthology more info
positive regulation of cold-induced thermogenesis	ISO Inferred from Sequence Orthology more info
positive regulation of cold-induced thermogenesis	ISS Inferred from Sequence or Structural Similarity more info	PubMed
positive regulation of endothelial cell chemotaxis by VEGF-activated vascular endothelial growth factor receptor signaling pathway	ISO Inferred from Sequence Orthology more info
positive regulation of endothelial cell migration	ISO Inferred from Sequence Orthology more info
positive regulation of endothelial cell migration	ISS Inferred from Sequence or Structural Similarity more info
positive regulation of endothelial cell proliferation	IBA Inferred from Biological aspect of Ancestor more info	PubMed
positive regulation of endothelial cell proliferation	ISO Inferred from Sequence Orthology more info
positive regulation of endothelial cell proliferation	ISS Inferred from Sequence or Structural Similarity more info
positive regulation of epithelial cell proliferation	ISO Inferred from Sequence Orthology more info
positive regulation of epithelial tube formation	ISO Inferred from Sequence Orthology more info
positive regulation of focal adhesion assembly	ISO Inferred from Sequence Orthology more info
positive regulation of focal adhesion assembly	ISS Inferred from Sequence or Structural Similarity more info
positive regulation of gene expression	ISO Inferred from Sequence Orthology more info
positive regulation of histone deacetylase activity	ISO Inferred from Sequence Orthology more info
positive regulation of lymphangiogenesis	ISO Inferred from Sequence Orthology more info
positive regulation of mast cell chemotaxis	IBA Inferred from Biological aspect of Ancestor more info	PubMed
positive regulation of mast cell chemotaxis	ISO Inferred from Sequence Orthology more info
positive regulation of mesenchymal cell proliferation	ISO Inferred from Sequence Orthology more info
positive regulation of neuroblast proliferation	ISO Inferred from Sequence Orthology more info
positive regulation of osteoblast differentiation	ISO Inferred from Sequence Orthology more info
positive regulation of p38MAPK cascade	ISO Inferred from Sequence Orthology more info
positive regulation of peptidyl-serine phosphorylation	ISO Inferred from Sequence Orthology more info
positive regulation of peptidyl-tyrosine autophosphorylation	ISO Inferred from Sequence Orthology more info
positive regulation of peptidyl-tyrosine phosphorylation	ISO Inferred from Sequence Orthology more info
positive regulation of peptidyl-tyrosine phosphorylation	ISS Inferred from Sequence or Structural Similarity more info
positive regulation of phosphatidylinositol 3-kinase signaling	ISO Inferred from Sequence Orthology more info
positive regulation of phosphorylation	ISO Inferred from Sequence Orthology more info
positive regulation of positive chemotaxis	ISO Inferred from Sequence Orthology more info
positive regulation of protein autophosphorylation	ISO Inferred from Sequence Orthology more info
positive regulation of protein kinase B signaling	ISO Inferred from Sequence Orthology more info
positive regulation of protein kinase C signaling	ISO Inferred from Sequence Orthology more info
positive regulation of protein kinase D signaling	ISO Inferred from Sequence Orthology more info
positive regulation of protein localization to early endosome	ISO Inferred from Sequence Orthology more info
positive regulation of protein phosphorylation	IBA Inferred from Biological aspect of Ancestor more info	PubMed
positive regulation of protein phosphorylation	ISO Inferred from Sequence Orthology more info
positive regulation of protein phosphorylation	ISS Inferred from Sequence or Structural Similarity more info
positive regulation of protein-containing complex assembly	ISO Inferred from Sequence Orthology more info
positive regulation of protein-containing complex assembly	ISS Inferred from Sequence or Structural Similarity more info
positive regulation of receptor internalization	ISO Inferred from Sequence Orthology more info
positive regulation of retinal ganglion cell axon guidance	ISO Inferred from Sequence Orthology more info
positive regulation of signal transduction	IDA Inferred from Direct Assay more info	PubMed
positive regulation of smooth muscle cell proliferation	IMP Inferred from Mutant Phenotype more info	PubMed
positive regulation of sprouting angiogenesis	ISO Inferred from Sequence Orthology more info
positive regulation of transcription by RNA polymerase II	IDA Inferred from Direct Assay more info	PubMed
positive regulation of transcription by RNA polymerase II	ISO Inferred from Sequence Orthology more info
positive regulation of transcription from RNA polymerase II promoter in response to hypoxia	ISO Inferred from Sequence Orthology more info
positive regulation of trophoblast cell migration	ISO Inferred from Sequence Orthology more info
NOT positive regulation of tyrosine phosphorylation of STAT protein	ISO Inferred from Sequence Orthology more info
positive regulation of vascular permeability	IMP Inferred from Mutant Phenotype more info	PubMed
positive regulation of vascular permeability	ISO Inferred from Sequence Orthology more info
post-embryonic camera-type eye development	ISO Inferred from Sequence Orthology more info
primitive erythrocyte differentiation	ISO Inferred from Sequence Orthology more info
regulation of cell shape	ISO Inferred from Sequence Orthology more info
regulation of endothelial cell differentiation	ISO Inferred from Sequence Orthology more info
regulation of growth	ISO Inferred from Sequence Orthology more info
regulation of hematopoietic progenitor cell differentiation	ISO Inferred from Sequence Orthology more info
regulation of nitric oxide mediated signal transduction	ISO Inferred from Sequence Orthology more info
regulation of retinal ganglion cell axon guidance	ISO Inferred from Sequence Orthology more info
NOT regulation of retinal ganglion cell axon guidance	ISO Inferred from Sequence Orthology more info
regulation of transcription by RNA polymerase II	ISO Inferred from Sequence Orthology more info
response to cold	IEP Inferred from Expression Pattern more info	PubMed
response to dexamethasone	IEP Inferred from Expression Pattern more info	PubMed
response to estradiol	IEP Inferred from Expression Pattern more info	PubMed
response to folic acid	IEP Inferred from Expression Pattern more info	PubMed
response to hypoxia	IBA Inferred from Biological aspect of Ancestor more info	PubMed
response to hypoxia	IDA Inferred from Direct Assay more info	PubMed
response to hypoxia	ISO Inferred from Sequence Orthology more info
response to oxygen levels	IEP Inferred from Expression Pattern more info	PubMed
response to progesterone	IEP Inferred from Expression Pattern more info	PubMed
response to vitamin A	IEP Inferred from Expression Pattern more info	PubMed
signal transduction	IEA Inferred from Electronic Annotation more info
sprouting angiogenesis	IBA Inferred from Biological aspect of Ancestor more info	PubMed
sprouting angiogenesis	ISO Inferred from Sequence Orthology more info
surfactant homeostasis	ISO Inferred from Sequence Orthology more info
tube formation	ISO Inferred from Sequence Orthology more info
tube formation	ISS Inferred from Sequence or Structural Similarity more info
vascular endothelial growth factor receptor signaling pathway	IBA Inferred from Biological aspect of Ancestor more info	PubMed
vascular endothelial growth factor receptor signaling pathway	IMP Inferred from Mutant Phenotype more info	PubMed
vascular endothelial growth factor receptor signaling pathway	ISO Inferred from Sequence Orthology more info
vascular endothelial growth factor receptor-2 signaling pathway	ISO Inferred from Sequence Orthology more info
vascular endothelial growth factor signaling pathway	IBA Inferred from Biological aspect of Ancestor more info	PubMed
vascular endothelial growth factor signaling pathway	ISO Inferred from Sequence Orthology more info
vascular wound healing	ISO Inferred from Sequence Orthology more info
vasculature development	ISO Inferred from Sequence Orthology more info
wound healing	IEP Inferred from Expression Pattern more info	PubMed

Component	Evidence Code	Pubs
adherens junction	ISO Inferred from Sequence Orthology more info
basement membrane	IDA Inferred from Direct Assay more info	PubMed
cell surface	ISO Inferred from Sequence Orthology more info
cytoplasm	ISO Inferred from Sequence Orthology more info
extracellular region	IEA Inferred from Electronic Annotation more info
extracellular region	ISO Inferred from Sequence Orthology more info
extracellular space	IBA Inferred from Biological aspect of Ancestor more info	PubMed
extracellular space	IDA Inferred from Direct Assay more info	PubMed
extracellular space	ISO Inferred from Sequence Orthology more info
membrane	IEA Inferred from Electronic Annotation more info
nucleus	ISO Inferred from Sequence Orthology more info
secretory granule	ISO Inferred from Sequence Orthology more info
vesicle	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: vascular endothelial growth factor A

Names: vascular permeability factor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001110333.2 → NP_001103803.1 vascular endothelial growth factor A isoform 2

See identical proteins and their annotated locations for NP_001103803.1

Status: REVIEWED

Description

Transcript Variant: This variant (2) lacks an in-frame, internal coding exon, compared to variant 1. This variant can initiate translation from non-AUG (CUG) site, and also from a downstream, in-frame AUG site. The isoform (2) represented in this RefSeq is derived from the CUG start codon and it lacks an internal segment, compared to isoform 1.

Source sequence(s)

AC108326, BC168708, CO565920

UniProtKB/TrEMBL

B5DEK7

Related

ENSRNOP00000026559.3, ENSRNOT00000026559.5

Conserved Domains (2) summary

smart00141
Location:228 → 310

PDGF; Platelet-derived and vascular endothelial growth factors (PDGF, VEGF) family

pfam14554
Location:316 → 369

VEGF_C; VEGF heparin-binding domain
NM_001110334.2 → NP_001103804.1 vascular endothelial growth factor A isoform 3

Status: REVIEWED

Description

Transcript Variant: This variant (3) lacks two consecutive in-frame exons in the 3' coding region, compared to variant 1. This variant can initiate translation from non-AUG (CUG) site, and also from a downstream, in-frame AUG site. The isoform (3) represented in this RefSeq is derived from the CUG start codon and it lacks an internal segment, compared to isoform 1.

Source sequence(s)

AC108326, AF215726, BC168708, CO565920

UniProtKB/Swiss-Prot

P16612

UniProtKB/TrEMBL

B5DEK7

Related

ENSRNOP00000050127.2, ENSRNOT00000044163.4

Conserved Domains (1) summary

smart00141
Location:228 → 310

PDGF; Platelet-derived and vascular endothelial growth factors (PDGF, VEGF) family
NM_001110335.1 → NP_001103805.1 vascular endothelial growth factor A isoform 4

See identical proteins and their annotated locations for NP_001103805.1

Status: REVIEWED

Description

Transcript Variant: This variant (4) differs in the 5' UTR and lacks a portion of the 5' coding region, compared to variant 1. The resulting isoform (4) has a shorter N-terminus, compared to isoform 1. This variant has transcript support, but the protein is predicted.

Source sequence(s)

BQ203400, CK357826, CK358638, CK364938, CK602714, CV107730

Conserved Domains (2) summary

pfam14554
Location:61 → 109

VEGF_C; VEGF heparin-binding domain

cl00116
Location:1 → 26

PDGF; Platelet-derived and vascular endothelial growth factors (PDGF, VEGF) family domain; PDGF is a potent activator for cells of mesenchymal origin; PDGF-A and PDGF-B form AA and BB homodimers and an AB heterodimer; VEGF is a potent mitogen in embryonic and ...
NM_001110336.1 → NP_001103806.1 vascular endothelial growth factor A isoform 5

See identical proteins and their annotated locations for NP_001103806.1

Status: REVIEWED

Description

Transcript Variant: This variant (5) differs in the 5' UTR and lacks a portion of the 5' coding region and an in-frame, internal coding exon, compared to variant 1. The resulting isoform (5) has a shorter N-terminus and lacks an internal segment, compared to isoform 1. This variant has transcript support, but the protein is predicted.

Source sequence(s)

BQ203400, CK357826, CK358638, CK364938, CK602714, CV107730

Conserved Domains (2) summary

pfam14554
Location:32 → 85

VEGF_C; VEGF heparin-binding domain

cl00116
Location:1 → 26

PDGF; Platelet-derived and vascular endothelial growth factors (PDGF, VEGF) family domain; PDGF is a potent activator for cells of mesenchymal origin; PDGF-A and PDGF-B form AA and BB homodimers and an AB heterodimer; VEGF is a potent mitogen in embryonic and ...
NM_001287107.1 → NP_001274036.1 vascular endothelial growth factor A isoform 6 precursor

See identical proteins and their annotated locations for NP_001274036.1

Status: REVIEWED

Description

Transcript Variant: This variant (1) represents the longest transcript. This variant can initiate translation from non-AUG (CUG) site, and also from a downstream, in-frame AUG site. The isoform (6) represented in this RefSeq is derived from the AUG start codon and it is shorter at the N-terminus, compared to isoform 1.

Source sequence(s)

AC108326, AF215725, BC168708, CO565920

UniProtKB/Swiss-Prot

P16612

UniProtKB/TrEMBL

B5DEK7

Conserved Domains (2) summary

smart00141
Location:49 → 131

PDGF; Platelet-derived and vascular endothelial growth factors (PDGF, VEGF) family

pfam14554
Location:166 → 214

VEGF_C; VEGF heparin-binding domain
NM_001287108.1 → NP_001274037.1 vascular endothelial growth factor A isoform Vegf-A precursor

See identical proteins and their annotated locations for NP_001274037.1

Status: REVIEWED

Description

Transcript Variant: This variant (2) lacks an in-frame, internal coding exon compared to variant 1. It can initiate translation from a non-AUG (CUG) codon, and also from an in-frame, downstream AUG start codon. The isoform (Vegf-A) represented in this RefSeq is derived from the AUG start codon. It has a shorter N-terminus and lacks an internal protein segment compared to isoform 1. This variant also encodes a C-terminally extended isoform (Vegf-Ax), which results from the use of an alternative in-frame, downstream translation termination codon (UAA). Isoform Vegf-Ax is represented in NM_001317043.1.

Source sequence(s)

AC108326, BC168708, CO565920

UniProtKB/Swiss-Prot

P16612

UniProtKB/TrEMBL

B5DEK7

Conserved Domains (2) summary

smart00141
Location:49 → 131

PDGF; Platelet-derived and vascular endothelial growth factors (PDGF, VEGF) family

pfam14554
Location:137 → 190

VEGF_C; VEGF heparin-binding domain
NM_001287110.1 → NP_001274039.1 vascular endothelial growth factor A isoform 8 precursor

See identical proteins and their annotated locations for NP_001274039.1

Status: REVIEWED

Description

Transcript Variant: This variant (3) lacks two consecutive in-frame exons in the 3' coding region, compared to variant 1. This variant can initiate translation from non-AUG (CUG) site, and also from a downstream, in-frame AUG site. The isoform (8) represented in this RefSeq is derived from the AUG start codon and it is shorter at the N-terminus and lacks an internal segment, compared to isoform 1.

Source sequence(s)

AC108326, AF215726, BC168708, CO565920

UniProtKB/Swiss-Prot

P16612

UniProtKB/TrEMBL

B5DEK7, Q541S7

Conserved Domains (1) summary

smart00141
Location:49 → 131

PDGF; Platelet-derived and vascular endothelial growth factors (PDGF, VEGF) family
NM_001287111.1 → NP_001274040.1 vascular endothelial growth factor A isoform 9

Status: REVIEWED

Description

Transcript Variant: This variant (6) lacks an in-frame, internal exon in the 3' coding region, compared to variant 1. This variant can initiate translation from non-AUG (CUG) site, and also from a downstream, in-frame AUG site. The isoform (9) represented in this RefSeq is derived from the CUG start codon and it lacks an internal segment, compared to isoform 1.

Source sequence(s)

AC108326, AF222779, BC168708, CO565920

UniProtKB/Swiss-Prot

P16612

UniProtKB/TrEMBL

B5DEK7

Related

ENSRNOP00000047820.3, ENSRNOT00000042790.3

Conserved Domains (1) summary

smart00141
Location:228 → 310

PDGF; Platelet-derived and vascular endothelial growth factors (PDGF, VEGF) family
NM_001287112.1 → NP_001274041.1 vascular endothelial growth factor A isoform 10 precursor

See identical proteins and their annotated locations for NP_001274041.1

Status: REVIEWED

Description

Transcript Variant: This variant (6) lacks an in-frame, internal exon in the 3' coding region, compared to variant 1. This variant can initiate translation from non-AUG (CUG) site, and also from a downstream, in-frame AUG site. The isoform (10) represented in this RefSeq is derived from the AUG start codon and it is shorter at the N-terminus and lacks an internal segment, compared to isoform 1.

Source sequence(s)

AC108326, AF222779, BC168708, CO565920

UniProtKB/Swiss-Prot

P16612

UniProtKB/TrEMBL

B5DEK7

Conserved Domains (1) summary

smart00141
Location:49 → 131

PDGF; Platelet-derived and vascular endothelial growth factors (PDGF, VEGF) family
NM_001287113.1 → NP_001274042.1 vascular endothelial growth factor A isoform 11

See identical proteins and their annotated locations for NP_001274042.1

Status: REVIEWED

Description

Transcript Variant: This variant (7) lacks an internal exon in the 5' region, which results in translation initiation at a downstream AUG site, and an in-frame, internal coding exon, compared to variant 1. The resulting isoform (11) is shorter at the N-terminus and lacks an internal segment, compared to isoform 1.

Source sequence(s)

AC108326, AY378102, BC168708, CO565920

UniProtKB/TrEMBL

A0A0G2K6Z7, B5DEK7

Related

ENSRNOP00000074002.1, ENSRNOT00000083811.1

Conserved Domains (2) summary

smart00141
Location:7 → 89

PDGF; Platelet-derived and vascular endothelial growth factors (PDGF, VEGF) family

pfam14554
Location:95 → 148

VEGF_C; VEGF heparin-binding domain
NM_001287114.1 → NP_001274043.1 vascular endothelial growth factor A isoform 12

See identical proteins and their annotated locations for NP_001274043.1

Status: REVIEWED

Description

Transcript Variant: This variant (8) lacks an internal exon in the 5' region, which results in translation initiation at a downstream AUG site, and two consecutive in-frame exons in the 3' coding region, compared to variant 1. The resulting isoform (12) is shorter at the N-terminus and lacks an internal segment, compared to isoform 1.

Source sequence(s)

AC108326, AF215726, AY378102, BC168708, CO565920

UniProtKB/Swiss-Prot

P16612

UniProtKB/TrEMBL

B5DEK7

Conserved Domains (1) summary

smart00141
Location:7 → 89

PDGF; Platelet-derived and vascular endothelial growth factors (PDGF, VEGF) family
NM_001317043.1 → NP_001303972.1 vascular endothelial growth factor A isoform Vegf-Ax precursor

Status: REVIEWED

Description

Transcript Variant: This variant (2) is identical to NM_001287108.1; however, it uses an alternative in-frame, downstream translation termination codon (UAA), which results in a longer, C-terminally extended isoform (Vegf-Ax) compared to isoform Vegf-A. Unlike isoform Vegf-A, which is proangiogenic, Vegf-Ax exhibits antiangiogenic activity. As the upstream UGA stop codon has been shown to be recoded as serine (PMID:24949972), its location in the Vegf-Ax isoform (aa 191) is denoted by an 'S'.

Source sequence(s)

AC108326, BC168708, CO565920

UniProtKB/TrEMBL

B5DEK7

Conserved Domains (2) summary

smart00141
Location:49 → 131

PDGF; Platelet-derived and vascular endothelial growth factors (PDGF, VEGF) family

pfam14554
Location:137 → 190

VEGF_C; VEGF heparin-binding domain
NM_031836.3 → NP_114024.2 vascular endothelial growth factor A isoform 1

Status: REVIEWED

Description

Transcript Variant: This variant (1) represents the longest transcript. This variant can initiate translation from non-AUG (CUG) site, and also from a downstream, in-frame AUG site. The isoform (1) represented in this RefSeq is derived from the CUG start codon and it is the longest isoform.

Source sequence(s)

AC108326, AF215725, BC168708, CO565920

UniProtKB/Swiss-Prot

P16612

UniProtKB/TrEMBL

B5DEK7

Related

ENSRNOP00000026637.4, ENSRNOT00000026637.7

Conserved Domains (2) summary

smart00141
Location:228 → 310

PDGF; Platelet-derived and vascular endothelial growth factors (PDGF, VEGF) family

pfam14554
Location:344 → 393

VEGF_C; VEGF heparin-binding domain

RNA

NR_105011.1 RNA Sequence

Status: REVIEWED

Description

Transcript Variant: This variant (9) has an alternate splice site and lacks an internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).

Source sequence(s)

AC108326, AY702972, BC168708, CO565920