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AT1G09410 pentatricopeptide (PPR) repeat-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837463, updated on 11-Jun-2019

Summary

Gene symbol
AT1G09410
Gene description
pentatricopeptide (PPR) repeat-containing protein
Primary source
Araport:AT1G09410
Locus tag
AT1G09410
Gene type
protein coding
RNA name
pentatricopeptide (PPR) repeat-containing protein
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14J9.7; F14J9_7

Genomic context

See AT1G09410 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (3035400..3037687)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene ncRNA Neighboring gene FMN-linked oxidoreductases superfamily protein Neighboring gene NIM1-interacting 3 Neighboring gene ncRNA Neighboring gene glucose-6-phosphate dehydrogenase 4

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

NM_100811.2

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
RNA modification IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
mitochondrion IEA
Inferred from Electronic Annotation
more info
 
mitochondrion ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
pentatricopeptide (PPR) repeat-containing protein
NP_172412.1
  • pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G56690.1); Has 49310 Blast hits to 14061 proteins in 238 species: Archae - 0; Bacteria - 33; Metazoa - 32; Fungi - 36; Plants - 48709; Viruses - 0; Other Eukaryotes - 500 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    3035400..3037687
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100811.2NP_172412.1  pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172412.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56XI1
    UniProtKB/TrEMBL
    A0A178WG80
    Conserved Domains (7) summary
    TIGR00756
    Location:266295
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00006
    Location:500530
    TPR; TPR repeat [structural motif]
    sd00004
    Location:399426
    PPR; PPR repeat [structural motif]
    pfam01535
    Location:398427
    PPR; PPR repeat
    pfam12854
    Location:176199
    PPR_1; PPR repeat
    pfam13041
    Location:78122
    PPR_2; PPR repeat family
    pfam14432
    Location:570695
    DYW_deaminase; DYW family of nucleic acid deaminases
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