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YPEL3 yippee like 3 [ Homo sapiens (human) ]

Gene ID: 83719, updated on 21-Dec-2019

Summary

Official Symbol
YPEL3provided by HGNC
Official Full Name
yippee like 3provided by HGNC
Primary source
HGNC:HGNC:18327
See related
Ensembl:ENSG00000090238 MIM:609724
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in spleen (RPKM 26.2), brain (RPKM 22.3) and 25 other tissues See more
Orthologs

Genomic context

See YPEL3 in Genome Data Viewer
Location:
16p11.2
Exon count:
6
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (30092314..30096213, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (30103635..30108248, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene protein phosphatase 4 catalytic subunit Neighboring gene T-box transcription factor 6 Neighboring gene uncharacterized LOC101928595 Neighboring gene glycerophosphodiester phosphodiesterase domain containing 3 Neighboring gene mitogen-activated protein kinase 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC10500

Gene Ontology Provided by GOA

Function Evidence Code Pubs
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
positive regulation of cellular senescence IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
nucleolus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145524.2NP_001138996.1  protein yippee-like 3 isoform 2

    See identical proteins and their annotated locations for NP_001138996.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) represents alternate splicing in the first exon (of variant 1) resulting in predicted use of a downstream translation start site and a shorter protein (isoform 2).
    Source sequence(s)
    AB098737, AC012645
    Consensus CDS
    CCDS45459.1
    UniProtKB/Swiss-Prot
    P61236
    UniProtKB/TrEMBL
    A0A024R624
    Related
    ENSP00000381818.4, ENST00000398838.8
    Conserved Domains (1) summary
    cl13152
    Location:21110
    RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains
  2. NM_031477.5NP_113665.3  protein yippee-like 3 isoform 1

    See identical proteins and their annotated locations for NP_113665.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents a longer transcript and longer protein isoform (1).
    Source sequence(s)
    AC012645, BC050664
    Consensus CDS
    CCDS42147.1
    UniProtKB/Swiss-Prot
    P61236
    Related
    ENSP00000381821.1, ENST00000398841.6
    Conserved Domains (1) summary
    cl13152
    Location:59148
    RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    30092314..30096213 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_950857.1 RNA Sequence

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