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[ Arabidopsis thaliana (thale cress) ]

Gene ID: 836827, updated on 11-Sep-2024

Summary

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Primary source
TAIR:AT5G66930
Locus tag
AT5G66930
See related
Araport:AT5G66930
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATG101; AUTOPHAGY-RELATED 101; MUD21.19; MUD21_19
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Genomic context

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Location:
chromosome: 5
Exon count:
7
Sequence:
Chromosome: 5; NC_003076.8 (26725839..26727758)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Disease resistance protein (CC-NBS-LRR class) family Neighboring gene SKU5 similar 17 Neighboring gene Dof-type zinc finger DNA-binding family protein Neighboring gene Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. AUTOPHAGY-RELATED11 plays a critical role in general autophagy- and senescence-induced mitophagy in Arabidopsis. Li F, et al. Plant Cell, 2014 Feb. PMID 24563201, Free PMC Article
  2. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
  3. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001161328.1
NM_126092.5
NM_180953.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
meiotically up-regulated protein
NP_001154800.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1649 (InterPro:IPR012445); Has 247 Blast hits to 247 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 89; Fungi - 83; Plants - 58; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
NP_569042.2
  • unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1649 (InterPro:IPR012445); Has 251 Blast hits to 251 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 91; Fungi - 85; Plants - 58; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
NP_851284.1
  • unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1649 (InterPro:IPR012445); Has 236 Blast hits to 236 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 93; Fungi - 70; Plants - 56; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    26725839..26727758
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001161328.1 → NP_001154800.1  meiotically up-regulated protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154800.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9YHN9, A0A7G2FQ74, F4K264
    Conserved Domains (1) summary
    pfam07855
    Location:49 → 212
    ATG101; Autophagy-related protein 101

  2. NM_126092.5 → NP_569042.2  meiotically up-regulated protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_569042.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4K265, Q84WU3, Q93ZX0, Q9FKY8
    UniProtKB/TrEMBL
    A0A178UAS0, A0A654GFX2
    Conserved Domains (1) summary
    pfam07855
    Location:10 → 176
    ATG101; Autophagy-related protein 101

  3. NM_180953.2 → NP_851284.1  meiotically up-regulated protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851284.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4K265
    Conserved Domains (1) summary
    pfam07855
    Location:10 → 123
    DUF1649; Protein of unknown function (DUF1649)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4K265.1