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FAM167A family with sequence similarity 167 member A [ Homo sapiens (human) ]

Gene ID: 83648, updated on 1-Jun-2020

Summary

Official Symbol
FAM167Aprovided by HGNC
Official Full Name
family with sequence similarity 167 member Aprovided by HGNC
Primary source
HGNC:HGNC:15549
See related
Ensembl:ENSG00000154319 MIM:610085
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
D8S265; C8orf13; DIORA-1
Expression
Biased expression in thyroid (RPKM 28.9), brain (RPKM 11.5) and 4 other tissues See more
Orthologs

Genomic context

See FAM167A in Genome Data Viewer
Location:
8p23.1
Exon count:
9
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 8 NC_000008.11 (11421465..11475909, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (11278972..11324276, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene FAM167A antisense RNA 1 Neighboring gene RNA, 7SL, cytoplasmic 293, pseudogene Neighboring gene RNA, U6 small nuclear 1084, pseudogene Neighboring gene BLK proto-oncogene, Src family tyrosine kinase Neighboring gene uncharacterized LOC105379241 Neighboring gene long intergenic non-protein coding RNA 208

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

NHGRI GWAS Catalog

Description
A genome-wide association study identifies three new risk loci for Kawasaki disease.
NHGRI GWA Catalog
Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC120649, MGC120650, MGC120651, DKFZp761G151

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
protein FAM167A
Names
disordered autoimmunity 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_053279.3NP_444509.2  protein FAM167A

    See identical proteins and their annotated locations for NP_444509.2

    Status: VALIDATED

    Source sequence(s)
    AJ301564, AL522457
    Consensus CDS
    CCDS5981.1
    UniProtKB/Swiss-Prot
    Q96KS9
    Related
    ENSP00000284486.4, ENST00000284486.9
    Conserved Domains (1) summary
    pfam11652
    Location:130214
    FAM167; FAM167

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p13 Primary Assembly

    Range
    11421465..11475909 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011543840.3XP_011542142.1  protein FAM167A isoform X1

    See identical proteins and their annotated locations for XP_011542142.1

    UniProtKB/Swiss-Prot
    Q96KS9
    Related
    ENSP00000432232.1, ENST00000534308.1
    Conserved Domains (1) summary
    pfam11652
    Location:130214
    FAM167; FAM167
  2. XM_011543838.3XP_011542140.1  protein FAM167A isoform X1

    See identical proteins and their annotated locations for XP_011542140.1

    UniProtKB/Swiss-Prot
    Q96KS9
    Conserved Domains (1) summary
    pfam11652
    Location:130214
    FAM167; FAM167
  3. XM_024447292.1XP_024303060.1  protein FAM167A isoform X1

    Conserved Domains (1) summary
    pfam11652
    Location:130214
    FAM167; FAM167
  4. XM_005272398.5XP_005272455.1  protein FAM167A isoform X1

    See identical proteins and their annotated locations for XP_005272455.1

    UniProtKB/Swiss-Prot
    Q96KS9
    Conserved Domains (1) summary
    pfam11652
    Location:130214
    FAM167; FAM167
  5. XM_011543837.1XP_011542139.1  protein FAM167A isoform X1

    See identical proteins and their annotated locations for XP_011542139.1

    UniProtKB/Swiss-Prot
    Q96KS9
    Related
    ENSP00000436655.1, ENST00000528897.1
    Conserved Domains (1) summary
    pfam11652
    Location:130214
    FAM167; FAM167

Reference GRCh38.p13 PATCHES

Genomic

  1. NW_018654717.1 Reference GRCh38.p13 PATCHES

    Range
    1881336..1927098
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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