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AT5G63190 MA3 domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836440, updated on 10-Oct-2019

Summary

Gene symbol
AT5G63190
Gene description
MA3 domain-containing protein
Primary source
Araport:AT5G63190
Locus tag
AT5G63190
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MDC12.16; MDC12_16

Genomic context

See AT5G63190 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (25345542..25348800)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene Pectin lyase-like superfamily protein Neighboring gene ncRNA Neighboring gene tetratricopeptide repeat (TPR)-containing protein Neighboring gene golgi-to-ER traffic-like protein Neighboring gene Carbohydrate-binding X8 domain superfamily protein

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

NM_125714.3
NM_180924.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
ribosome binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
negative regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
regulation of translation IEA
Inferred from Electronic Annotation
more info
 
response to absence of light IEP
Inferred from Expression Pattern
more info
PubMed 
response to carbon starvation IEP
Inferred from Expression Pattern
more info
PubMed 
Component Evidence Code Pubs
cytosol IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 
nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
MA3 domain-containing protein
NP_568968.1
  • MA3 domain-containing protein; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MA3 domain-containing protein (TAIR:AT3G48390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_851255.1
  • MA3 domain-containing protein; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MA3 domain-containing protein (TAIR:AT3G48390.1); Has 1948 Blast hits to 791 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 1230; Fungi - 12; Plants - 571; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    25345542..25348800
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180924.3NP_851255.1  MA3 domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851255.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UJH1, Q94BR1
    Conserved Domains (2) summary
    smart00544
    Location:123234
    MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins
    pfam02847
    Location:585692
    MA3; MA3 domain
  2. NM_125714.3NP_568968.1  MA3 domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568968.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UJH1, Q94BR1
    Conserved Domains (2) summary
    smart00544
    Location:123234
    MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins
    pfam02847
    Location:585692
    MA3; MA3 domain
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