U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

OBP4 OBF binding protein 4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836206, updated on 7-Sep-2023

Summary

Go to the top of the page Help
Gene symbol
OBP4
Gene description
OBF binding protein 4
Primary source
Araport:AT5G60850
Locus tag
AT5G60850
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MAE1.2; MAE1_2; OBF binding protein 4; ZINC FINGER PROTEIN OBP4
Summary
Encodes a zinc finger protein.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (24480291..24482163)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene uncharacterized protein Neighboring gene basic leucine-zipper 70 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene RAB GTPase homolog A1F

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The transcription factor OBP4 controls root growth and promotes callus formation. Ramirez-Parra E, et al. New Phytol, 2017 Mar. PMID 27859363
  2. AtDOF5.4/OBP4, a DOF Transcription Factor Gene that Negatively Regulates Cell Cycle Progression and Cell Expansion in Arabidopsis thaliana. Xu P, et al. Sci Rep, 2016 Jun 14. PMID 27297966, Free PMC Article
  3. Nitrate-responsive OBP4-XTH9 regulatory module controls lateral root development in Arabidopsis thaliana. Xu P, et al. PLoS Genet, 2019 Oct. PMID 31626627, Free PMC Article
  4. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Rymen B, et al. Plant Physiol, 2017 Mar. PMID 28167701, Free PMC Article
  5. The Dof family of plant transcription factors. Yanagisawa S. Trends Plant Sci, 2002 Dec. PMID 12475498

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Study identified a nitrogen-responsive signaling module that comprises both xyloglucan endotransglucosylase 9 (XTH9) and the Dof transcription factor OBP4 and controls lateral root (LR) development in Arabidopsis. OBP4 bound to the promoter of XTH9 to suppress XTH9 expression to antagonistically control XTH9 expression. OBP4-XTH9 module elaborately sustains LR development in response to nitrate treatment.
    Title: Nitrate-responsive OBP4-XTH9 regulatory module controls lateral root development in Arabidopsis thaliana.
  2. OBP4 is a negative regulator of cell cycle progression and cell growth.
    Title: AtDOF5.4/OBP4, a DOF Transcription Factor Gene that Negatively Regulates Cell Cycle Progression and Cell Expansion in Arabidopsis thaliana.
  3. Arabidopsis OBP4 (OBF Binding Protein 4) is a novel regulator of root growth and cell elongation and differentiation.
    Title: The transcription factor OBP4 controls root growth and promotes callus formation.
  4. Results suggest that OBF BINDING PROTEIN4 (OBP4)-mediated transcriptional repression of ROOT HAIR DEFECTIVE6-LIKE2 (RSL2) promoter to repress RSL2 contributes to the abscisic acid (ABA)-dependent inhibition of root hair growth.
    Title: ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Homology

NM_125478.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
OBF binding protein 4
NP_200893.1
  • OBF binding protein 4 (OBP4); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: DOF zinc finger protein 1 (TAIR:AT1G51700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    24480291..24482163
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125478.4 → NP_200893.1  OBF binding protein 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200893.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LDR0, Q9FJH1, Q9XGU5
    UniProtKB/TrEMBL
    A0A178UF84, A0A5S9YG40, Q0WUB6
    Conserved Domains (1) summary
    pfam02701
    Location:51 → 106
    zf-Dof; Dof domain, zinc finger
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8LDR0.2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools