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AT5G59240 Ribosomal protein S8e family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836042, updated on 11-Oct-2018

Summary

Gene symbol
AT5G59240
Gene description
Ribosomal protein S8e family protein
Primary source
Araport:AT5G59240
Locus tag
AT5G59240
Gene type
protein coding
RNA name
Ribosomal protein S8e family protein
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MNC17.7; MNC17_7

Genomic context

See AT5G59240 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (23902462..23903767, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene PP2C protein (Clade A protein phosphatases type 2C) Neighboring gene ncRNA Neighboring gene transcription factor-like protein Neighboring gene Major facilitator superfamily protein Neighboring gene Concanavalin A-like lectin protein kinase family protein Neighboring gene ncRNA

Pathways from BioSystems

General gene information

Homology

NM_125314.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
structural constituent of ribosome ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Process Evidence Code Pubs
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ribosome biogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
translation IEA
Inferred from Electronic Annotation
more info
 
translation ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Component Evidence Code Pubs
cytoplasm ISM
Inferred from Sequence Model
more info
 
cytosolic ribosome IDA
Inferred from Direct Assay
more info
PubMed 
cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosolic small ribosomal subunit IDA
Inferred from Direct Assay
more info
PubMed 
cytosolic small ribosomal subunit ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
membrane IDA
Inferred from Direct Assay
more info
PubMed 
ribosome ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
Ribosomal protein S8e family protein
NP_200732.2
  • Ribosomal protein S8e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8e (InterPro:IPR001047), Ribosomal protein S8e, conserved site (InterPro:IPR018283), Ribosomal protein S8e/ribosomal biogenesis NSA2= (InterPro:IPR022309); BEST Arabidopsis thaliana protein match is: Ribosomal protein S8e family protein (TAIR:AT5G20290.1); Has 1068 Blast hits to 1064 proteins in 429 species: Archae - 247; Bacteria - 0; Metazoa - 364; Fungi - 161; Plants - 120; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    23902462..23903767 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125314.5NP_200732.2  Ribosomal protein S8e family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200732.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FIF3
    UniProtKB/TrEMBL
    A0A178ULB8, Q0WSK1
    Conserved Domains (2) summary
    cd11380
    Location:5187
    Ribosomal_S8e_like; Eukaryotic/archaeal ribosomal protein S8e and similar proteins
    PTZ00148
    Location:1196
    PTZ00148; 40S ribosomal protein S8; Provisional
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