Format

Send to:

Choose Destination

Cpn60beta3 TCP-1/cpn60 chaperonin family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835751, updated on 11-Oct-2018

Summary

Gene symbol
Cpn60beta3
Gene description
TCP-1/cpn60 chaperonin family protein
Primary source
Araport:AT5G56500
Locus tag
AT5G56500
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
chaperonin-60beta3; MCD7.27; MCD7_27
Summary
Encodes a subunit of chloroplasts chaperonins that are involved in mediating the folding of newly synthesized, translocated, or stress-denatured proteins. Cpn60 subunits are: Cpn60alpha1 (At2g28000), AtCpn60alpha2 (At5g18820), AtCpn60beta1 (At1g55490), AtCpn60beta2 (At3g13470), AtCpn60beta3 (At5g56500), AtCpn60beta4 (At1g26230).

Genomic context

See Cpn60beta3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
15
Sequence:
Chromosome: 5; NC_003076.8 (22873666..22877407)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene D-arabinono-1,4-lactone oxidase family protein Neighboring gene ncRNA Neighboring gene pumilio 12 Neighboring gene hypothetical protein

Pathways from BioSystems

  • RNA degradation, organism-specific biosystem (from KEGG)
    RNA degradation, organism-specific biosystemThe correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay e...
  • RNA degradation, conserved biosystem (from KEGG)
    RNA degradation, conserved biosystemThe correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay e...

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_001037006.4
NM_125033.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
unfolded protein binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
'de novo' protein folding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrion organization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein refolding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
chloroplast IDA
Inferred from Direct Assay
more info
PubMed 
chloroplast ISM
Inferred from Sequence Model
more info
 
chloroplast stroma IDA
Inferred from Direct Assay
more info
PubMed 
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosol IDA
Inferred from Direct Assay
more info
PubMed 
membrane IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrion IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
TCP-1/cpn60 chaperonin family protein
NP_001032083.1
  • TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, protein refolding, cellular protein metabolic process; LOCATED IN: mitochondrion, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G13470.1); Has 34131 Blast hits to 34103 proteins in 8687 species: Archae - 803; Bacteria - 21732; Metazoa - 1746; Fungi - 1619; Plants - 829; Viruses - 2; Other Eukaryotes - 7400 (source: NCBI BLink).
NP_200461.4
  • TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, protein refolding, cellular protein metabolic process; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G13470.1); Has 34404 Blast hits to 34375 proteins in 8725 species: Archae - 780; Bacteria - 22076; Metazoa - 1687; Fungi - 1649; Plants - 826; Viruses - 2; Other Eukaryotes - 7384 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    22873666..22877407
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001037006.4NP_001032083.1  TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001032083.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0Z361
    UniProtKB/TrEMBL
    A0A178UKH6
    Conserved Domains (2) summary
    PLN03167
    Location:1597
    PLN03167; Chaperonin-60 beta subunit; Provisional
    PRK12850
    Location:51597
    groEL; chaperonin GroEL; Reviewed
  2. NM_125033.5NP_200461.4  TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200461.4

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0Z361
    UniProtKB/TrEMBL
    A0A178UKH6
    Conserved Domains (2) summary
    PLN03167
    Location:1597
    PLN03167; Chaperonin-60 beta subunit; Provisional
    PRK12850
    Location:51597
    groEL; chaperonin GroEL; Reviewed
Support Center