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RBP45A RNA-binding protein 45A [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835581, updated on 15-Feb-2024

Summary

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Gene symbol
RBP45A
Gene description
RNA-binding protein 45A
Primary source
Araport:AT5G54900
Locus tag
AT5G54900
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATRBP45A; RNA-binding protein 45A
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Genomic context

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See RBP45A in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Sequence:
Chromosome: 5; NC_003076.8 (22295369..22298395)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene DTW domain-containing protein Neighboring gene RNA-binding CRS1 / YhbY (CRM) domain-containing protein Neighboring gene DEA(D/H)-box RNA helicase family protein Neighboring gene polyadenylate-binding protein interacting protein Neighboring gene AT hook motif-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Interaction with Cu²⁺ disrupts the RNA binding affinities of RNA recognition motif containing protein. Qin X, et al. Biochem Biophys Res Commun, 2014 Feb 7. PMID 24434156
  2. RBP45 and RBP47, two oligouridylate-specific hnRNP-like proteins interacting with poly(A)+ RNA in nuclei of plant cells. Lorković ZJ, et al. RNA, 2000 Nov. PMID 11105760, Free PMC Article
  3. Protein and metabolite composition of Arabidopsis stress granules. Kosmacz M, et al. New Phytol, 2019 May. PMID 30664249
  4. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
  5. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Data indicate that the RNA binding activities of recombinant AtRBP45A and AtRBP47A were impaired in the presence of Cu(2+).
    Title: Interaction with Cu²⁺ disrupts the RNA binding affinities of RNA recognition motif containing protein.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_124872.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables poly(A) binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic stress granule IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein 45A
NP_568815.1
  • RNA-binding protein 45A (RBP45A); FUNCTIONS IN: RNA binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G27000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    22295369..22298395
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124872.3 → NP_568815.1  RNA-binding protein 45A [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568815.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FFU0, Q9FPJ8
    UniProtKB/TrEMBL
    A0A178UGM5, A0A5S9YGE6, A0A7G2FGD5
    Conserved Domains (3) summary
    cd12344
    Location:61 → 138
    RRM1_SECp43_like; RNA recognition motif 1 (RRM1) found in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
    cd12345
    Location:153 → 232
    RRM2_SECp43_like; RNA recognition motif 2 (RRM2) found in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
    cd12346
    Location:259 → 330
    RRM3_NGR1_NAM8_like; RNA recognition motif 3 (RRM3) found in yeast negative growth regulatory protein NGR1 (RBP1), yeast protein NAM8 and similar proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FPJ8.1

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