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AT5G51910 TCP family transcription factor [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835266, updated on 22-Feb-2019

Summary

Gene symbol
AT5G51910
Gene description
TCP family transcription factor
Primary source
Araport:AT5G51910
Locus tag
AT5G51910
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MJM18.6; MJM18_6; TCP domain protein 19; TCP19

Genomic context

See AT5G51910 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (21094547..21095891, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene Peroxidase superfamily protein Neighboring gene Cytochrome P450 family protein Neighboring gene hypothetical protein Neighboring gene Pyridoxal phosphate (PLP)-dependent transferases superfamily protein Neighboring gene Glucose-methanol-choline (GMC) oxidoreductase family protein

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_124570.4
NM_180842.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
regulation of defense response IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of transcription, DNA-templated TAS
Traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
TCP family transcription factor
NP_200004.1
  • TCP family transcription factor; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT2G45680.1); Has 731 Blast hits to 731 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 731; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_851173.1
  • TCP family transcription factor; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT2G45680.1); Has 731 Blast hits to 731 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 731; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    21094547..21095891 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180842.1NP_851173.1  TCP family transcription factor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851173.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LT89
    UniProtKB/TrEMBL
    A0A178UCD4
    Conserved Domains (1) summary
    cl23822
    Location:56118
    TCP; TCP family transcription factor
  2. NM_124570.4NP_200004.1  TCP family transcription factor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200004.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LT89
    UniProtKB/TrEMBL
    A0A178UCD4
    Conserved Domains (1) summary
    cl23822
    Location:56118
    TCP; TCP family transcription factor
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