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Polr2f RNA polymerase II subunit F [ Rattus norvegicus (Norway rat) ]

Gene ID: 83503, updated on 9-Sep-2018

Summary

Official Symbol
Polr2fprovided by RGD
Official Full Name
RNA polymerase II subunit Fprovided by RGD
Primary source
RGD:708567
See related
Ensembl:ENSRNOG00000011214
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
required subunit of all eukaryotic RNA polymerases [RGD, Feb 2006]
Expression
Biased expression in Heart (RPKM 110.9), Kidney (RPKM 72.3) and 9 other tissues See more
Orthologs

Genomic context

See Polr2f in Genome Data Viewer
Location:
7q34
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (120380543..120392214)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 7 NC_005106.3 (120374362..120386031)

Chromosome 7 - NC_005106.4Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3, subunit L Neighboring gene MICAL-like 1 Neighboring gene similar to RIKEN cDNA 1700088E04 Neighboring gene SRY box 10 Neighboring gene protein interacting with PRKCA 1

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
contributes_to DNA-directed 5'-3' RNA polymerase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
DNA-directed 5'-3' RNA polymerase activity TAS
Traceable Author Statement
more info
PubMed 
contributes_to RNA polymerase I activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
contributes_to RNA polymerase II activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
contributes_to RNA polymerase III activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
transcription by RNA polymerase I TAS
Traceable Author Statement
more info
PubMed 
transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
transcription by RNA polymerase II ISS
Inferred from Sequence or Structural Similarity
more info
 
transcription by RNA polymerase II TAS
Traceable Author Statement
more info
PubMed 
transcription by RNA polymerase III TAS
Traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
RNA polymerase I complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA polymerase I complex TAS
Traceable Author Statement
more info
PubMed 
RNA polymerase II, core complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA polymerase II, core complex ISO
Inferred from Sequence Orthology
more info
 
RNA polymerase II, core complex ISS
Inferred from Sequence or Structural Similarity
more info
 
RNA polymerase II, core complex TAS
Traceable Author Statement
more info
PubMed 
RNA polymerase III complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA polymerase III complex TAS
Traceable Author Statement
more info
PubMed 
cellular_component ND
No biological Data available
more info
 
fibrillar center ISO
Inferred from Sequence Orthology
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
DNA-directed RNA polymerases I, II, and III subunit RPABC2
Names
DNA-directed RNA polymerase II subunit F
RNA polymerases I, II, and III subunit ABC2
RPB6 homolog
polymerase (RNA) II (DNA directed) polypeptide F
polymerase (RNA) II subunit F
polymerase II
NP_112625.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_031335.3NP_112625.1  DNA-directed RNA polymerases I, II, and III subunit RPABC2

    See identical proteins and their annotated locations for NP_112625.1

    Status: PROVISIONAL

    Source sequence(s)
    AB017711
    UniProtKB/Swiss-Prot
    O88828
    Related
    ENSRNOP00000015009.3, ENSRNOT00000015009.6
    Conserved Domains (1) summary
    PLN00152
    Location:26127
    PLN00152; DNA-directed RNA polymerase; Provisional

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005106.4 Reference Rnor_6.0 Primary Assembly

    Range
    120380543..120392214
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_355831.3 RNA Sequence

Alternate Rn_Celera

Genomic

  1. AC_000075.1 Alternate Rn_Celera

    Range
    107047109..107056555
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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