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SH3BGRL3 SH3 domain binding glutamate rich protein like 3 [ Homo sapiens (human) ]

Gene ID: 83442, updated on 6-Jan-2019

Summary

Official Symbol
SH3BGRL3provided by HGNC
Official Full Name
SH3 domain binding glutamate rich protein like 3provided by HGNC
Primary source
HGNC:HGNC:15568
See related
Ensembl:ENSG00000142669 MIM:615679
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TIP-B1; SH3BP-1; HEL-S-297
Expression
Ubiquitous expression in appendix (RPKM 140.1), colon (RPKM 114.4) and 25 other tissues See more
Orthologs

Genomic context

See SH3BGRL3 in Genome Data Viewer
Location:
1p36.11
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 1 NC_000001.11 (26279722..26281522)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (26606213..26608013)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101928303 Neighboring gene centrosomal protein 85 Neighboring gene mitochondrial ribosomal protein S6 pseudogene 1 Neighboring gene UBX domain protein 11 Neighboring gene CD52 molecule Neighboring gene crystallin beta-gamma domain containing 2 Neighboring gene ribosomal protein L34 pseudogene 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
electron transfer activity IEA
Inferred from Electronic Annotation
more info
 
protein disulfide oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
cell redox homeostasis IEA
Inferred from Electronic Annotation
more info
 
electron transport chain IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
extracellular exosome HDA PubMed 
nuclear body IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
SH3 domain-binding glutamic acid-rich-like protein 3
Names
SH3 domain binding glutamic acid-rich protein like 3
SH3 domain-binding protein 1
SH3BGRL3-like protein
TNF inhibitory protein
epididymis secretory protein Li 297
epididymis secretory sperm binding protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_031286.4NP_112576.1  SH3 domain-binding glutamic acid-rich-like protein 3

    See identical proteins and their annotated locations for NP_112576.1

    Status: VALIDATED

    Source sequence(s)
    BC030135
    Consensus CDS
    CCDS278.1
    UniProtKB/Swiss-Prot
    Q9H299
    Related
    ENSP00000270792.5, ENST00000270792.9
    Conserved Domains (1) summary
    pfam04908
    Location:293
    SH3BGR; SH3-binding, glutamic acid-rich protein

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p12 Primary Assembly

    Range
    26279722..26281522
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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