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AT5G43410 Integrase-type DNA-binding superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834360, updated on 7-Sep-2023

Summary

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Gene symbol
AT5G43410
Gene description
Integrase-type DNA-binding superfamily protein
Primary source
Araport:AT5G43410
Locus tag
AT5G43410
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MWF20.11; MWF20_11
Summary
encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.
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Genomic context

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Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (17435010..17435405, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene pseudo Neighboring gene RING/U-box superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structural insights into Arabidopsis ethylene response factor 96 with an extended N-terminal binding to GCC box. Chen CY, et al. Plant Mol Biol, 2020 Nov. PMID 32813232, Free PMC Article
  2. Overexpression of ethylene response factor ERF96 gene enhances selenium tolerance in Arabidopsis. Jiang L, et al. Plant Physiol Biochem, 2020 Apr. PMID 32097848
  3. The Small Ethylene Response Factor ERF96 is Involved in the Regulation of the Abscisic Acid Response in Arabidopsis. Wang X, et al. Front Plant Sci, 2015. PMID 26635862, Free PMC Article
  4. ETHYLENE RESPONSE FACTOR 96 positively regulates Arabidopsis resistance to necrotrophic pathogens by direct binding to GCC elements of jasmonate - and ethylene-responsive defence genes. Catinot J, et al. Plant Cell Environ, 2015 Dec. PMID 26038230
  5. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Structural insights into Arabidopsis ethylene response factor 96 with an extended N-terminal binding to GCC box.
    Title: Structural insights into Arabidopsis ethylene response factor 96 with an extended N-terminal binding to GCC box.
  2. ERF96 plays a positive role in the regulation of selenite tolerance in Arabidopsis
    Title: Overexpression of ethylene response factor ERF96 gene enhances selenium tolerance in Arabidopsis.
  3. This work revealed ERF96 as a key player of the ethylene responsive factor (ERF) network that positively regulates the Arabidopsis resistance response to necrotrophic pathogens.
    Title: ETHYLENE RESPONSE FACTOR 96 positively regulates Arabidopsis resistance to necrotrophic pathogens by direct binding to GCC elements of jasmonate - and ethylene-responsive defence genes.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables sequence-specific DNA binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within positive regulation of abscisic acid-activated signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within positive regulation of cellular defense response IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within stomatal closure IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Integrase-type DNA-binding superfamily protein
NP_199154.1
  • Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Ethylene-responsive element binding factor 14 (TAIR:AT1G04370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    17435010..17435405 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123707.1 → NP_199154.1  Integrase-type DNA-binding superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199154.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0MFL8, Q6J9R1, Q9LSX0
    UniProtKB/TrEMBL
    A0A178UK17, A0A5S9YBQ1, A0A654G7N2
    Conserved Domains (1) summary
    smart00380
    Location:14 → 73
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
5WX9_A.1
Q9LSX0.1

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