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AT5G41060 DHHC-type zinc finger family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834108, updated on 7-Sep-2023

Summary

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Gene symbol
AT5G41060
Gene description
DHHC-type zinc finger family protein
Primary source
Araport:AT5G41060
Locus tag
AT5G41060
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MEE6.13; MEE6_13
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Genomic context

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Location:
chromosome: 5
Exon count:
7
Sequence:
Chromosome: 5; NC_003076.8 (16435153..16437805)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene HXXXD-type acyl-transferase family protein Neighboring gene Pollen Ole e 1 allergen and extensin family protein Neighboring gene miscRNA Neighboring gene dsRNA-binding protein 5 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001085218.2
NM_001344380.1
NM_001344381.1
NM_123471.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein-cysteine S-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DHHC-type zinc finger family protein
NP_001078687.1
  • DHHC-type zinc finger family protein; FUNCTIONS IN: receptor activity, zinc ion binding; INVOLVED IN: multicellular organismal development; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594), Plexin-like fold (InterPro:IPR016201); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT3G26935.1); Has 5132 Blast hits to 5125 proteins in 249 species: Archae - 0; Bacteria - 0; Metazoa - 2201; Fungi - 730; Plants - 844; Viruses - 0; Other Eukaryotes - 1357 (source: NCBI BLink).
NP_198922.1
  • DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT3G26935.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    16435153..16437805
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123471.4 → NP_198922.1  DHHC-type zinc finger family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198922.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FLM3
    UniProtKB/TrEMBL
    A0A178UBG9, A0A5S9YAE6, A0A654G6W4
    Conserved Domains (1) summary
    pfam01529
    Location:147 → 273
    DHHC; DHHC palmitoyltransferase

  2. NM_001344380.1 → NP_001331237.1  DHHC-type zinc finger family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BD91, A0A654G6W4, A0A7G2FJL0
    Conserved Domains (1) summary
    pfam01529
    Location:80 → 206
    DHHC; DHHC palmitoyltransferase

  3. NM_001344381.1 → NP_001331236.1  DHHC-type zinc finger family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BD91, A0A654G6W4, A0A7G2FJL0
    Conserved Domains (1) summary
    pfam01529
    Location:80 → 206
    DHHC; DHHC palmitoyltransferase

  4. NM_001085218.2 → NP_001078687.1  DHHC-type zinc finger family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078687.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654G6W4, A8MRY3
    Conserved Domains (1) summary
    pfam01529
    Location:132 → 258
    zf-DHHC; DHHC palmitoyltransferase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FLM3.1

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