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AT5G39730 AIG2-like (avirulence induced gene) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 833969, updated on 15-Feb-2024

Summary

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Gene symbol
AT5G39730
Gene description
AIG2-like (avirulence induced gene) family protein
Primary source
Araport:AT5G39730
Locus tag
AT5G39730
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MKM21.20; MKM21_20
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Genomic context

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See AT5G39730 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (15901569..15902958)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene lysine histidine transporter-like protein Neighboring gene avirulence induced protein 2 like protein Neighboring gene ribosomal protein L5 B Neighboring gene AGAMOUS-like 81

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of new intrinsic proteins in Arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2004 Jul. PMID 15060130
  2. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812
  3. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
  4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_123335.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane HDA PubMed 
located_in plastid HDA PubMed 

General protein information

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Preferred Names
AIG2-like (avirulence induced gene) family protein
NP_198789.1
  • AIG2-like (avirulence induced gene) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AIG2-like (InterPro:IPR009288); BEST Arabidopsis thaliana protein match is: avirulence induced gene 2 like protein (TAIR:AT5G39720.1); Has 284 Blast hits to 284 proteins in 86 species: Archae - 10; Bacteria - 64; Metazoa - 0; Fungi - 51; Plants - 104; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    15901569..15902958
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123335.4 → NP_198789.1  AIG2-like (avirulence induced gene) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198789.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FIX1
    UniProtKB/TrEMBL
    A0A178U7K5, A0A5S9YBQ5, A0A654G6I0
    Conserved Domains (1) summary
    pfam06094
    Location:12 → 124
    GGACT; Gamma-glutamyl cyclotransferase, AIG2-like
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FIX1.1

Gene LinkOut

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