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AT5G27490 Integral membrane Yip1 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832808, updated on 15-Feb-2024

Summary

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Gene symbol
AT5G27490
Gene description
Integral membrane Yip1 family protein
Primary source
Araport:AT5G27490
Locus tag
AT5G27490
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F21A20.200; F21A20_200
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Genomic context

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See AT5G27490 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (9702835..9704743, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene seryl-tRNA synthetase / serine-tRNA ligase Neighboring gene pseudo Neighboring gene uncharacterized protein Neighboring gene Defensin-like (DEFL) family protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
  4. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_122631.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Integral membrane Yip1 family protein
NP_198101.2
  • Integral membrane Yip1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana protein match is: Integral membrane Yip1 family protein (TAIR:AT3G05280.1); Has 530 Blast hits to 529 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 237; Fungi - 113; Plants - 90; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    9702835..9704743 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122631.4 → NP_198101.2  Integral membrane Yip1 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198101.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U782, A0A5S9Y7L9, F4K4B8
    Conserved Domains (1) summary
    pfam04893
    Location:105 → 273
    Yip1; Yip1 domain
Nucleotide Protein
Heading Accession and Version

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