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SYP41 syntaxin of plants 41 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832756, updated on 15-Oct-2023

Summary

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Gene symbol
SYP41
Gene description
syntaxin of plants 41
Primary source
Araport:AT5G26980
Locus tag
AT5G26980
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATSYP41; ATTLG2A; F2P16.16; F2P16_16; syntaxin of plants 41
Summary
member of SYP4 Gene Family
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Genomic context

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See SYP41 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Sequence:
Chromosome: 5; NC_003076.8 (9488133..9491092, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene uncharacterized protein Neighboring gene Drought-responsive family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TNO1 is involved in salt tolerance and vacuolar trafficking in Arabidopsis. Kim SJ, et al. Plant Physiol, 2011 Jun. PMID 21521696, Free PMC Article
  2. Qa-SNAREs localized to the trans-Golgi network regulate multiple transport pathways and extracellular disease resistance in plants. Uemura T, et al. Proc Natl Acad Sci U S A, 2012 Jan 31. PMID 22307646, Free PMC Article
  3. AtVPS45 is a positive regulator of the SYP41/SYP61/VTI12 SNARE complex involved in trafficking of vacuolar cargo. Zouhar J, et al. Plant Physiol, 2009 Apr. PMID 19251905, Free PMC Article
  4. YKT6 is a core constituent of membrane fusion machineries at the Arabidopsis trans-Golgi network. Chen Y, et al. J Mol Biol, 2005 Jul 1. PMID 15919093
  5. Functional redundancy between trans-Golgi network SNARE family members in Arabidopsis thaliana. Kim SJ, et al. BMC Biochem, 2013 Sep 11. PMID 24021022, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001036873.2
NM_001343989.1
NM_122580.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
  
enables SNAP receptor activity TAS
Traceable Author Statement
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in Golgi to plasma membrane protein transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in Golgi to vacuole transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in chloroplast organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in defense response to fungus IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in intracellular protein transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within intracellular protein transport TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within membrane fusion TAS
Traceable Author Statement
more info
 PubMed 
involved_in salicylic acid mediated signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in trans-Golgi network membrane organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in vesicle fusion IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus ISM
Inferred from Sequence Model
more info
  
part_of SNARE complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in trans-Golgi network IDA
Inferred from Direct Assay
more info
 PubMed 
located_in trans-Golgi network TAS
Traceable Author Statement
more info
 PubMed 
located_in trans-Golgi network transport vesicle TAS
Traceable Author Statement
more info
 PubMed 

General protein information

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Preferred Names
syntaxin of plants 41
NP_001031950.1
  • syntaxin of plants 41 (SYP41); CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 43 (TAIR:AT3G05710.2); Has 2253 Blast hits to 2241 proteins in 274 species: Archae - 0; Bacteria - 54; Metazoa - 961; Fungi - 480; Plants - 362; Viruses - 0; Other Eukaryotes - 396 (source: NCBI BLink).
NP_198050.1
  • syntaxin of plants 41 (SYP41); CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 43 (TAIR:AT3G05710.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    9488133..9491092 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001036873.2 → NP_001031950.1  syntaxin of plants 41 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031950.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O04639, O65359
    UniProtKB/TrEMBL
    A0A5S9Y7I5, A0A654G4F8
    Conserved Domains (1) summary
    COG5325
    Location:73 → 318
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

  2. NM_122580.4 → NP_198050.1  syntaxin of plants 41 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198050.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O04639, O65359
    UniProtKB/TrEMBL
    A0A5S9Y7I5, A0A654G4F8
    Conserved Domains (1) summary
    COG5325
    Location:73 → 318
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

  3. NM_001343989.1 → NP_001331924.1  syntaxin of plants 41 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O04639, O65359
    UniProtKB/TrEMBL
    A0A5S9Y7I5, A0A654G4F8
    Conserved Domains (1) summary
    COG5325
    Location:73 → 318
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O65359.1

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