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GATA12 GATA transcription factor 12 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832652, updated on 7-Sep-2023

Summary

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Gene symbol
GATA12
Gene description
GATA transcription factor 12
Primary source
Araport:AT5G25830
Locus tag
AT5G25830
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F18A17.80; F18A17_80; GATA transcription factor 12
Summary
Encodes a member of the GATA factor family of zinc finger transcription factors.
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (9004236..9005941, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Exostosin family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene DUF1677 family protein (DUF1677)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor. Ravindran P, et al. Mol Plant, 2017 Oct 9. PMID 28917589
  2. Multiple classes of transcription factors regulate the expression of VASCULAR-RELATED NAC-DOMAIN7, a master switch of xylem vessel differentiation. Endo H, et al. Plant Cell Physiol, 2015 Feb. PMID 25265867
  3. Conservation, convergence, and divergence of light-responsive, circadian-regulated, and tissue-specific expression patterns during evolution of the Arabidopsis GATA gene family. Manfield IW, et al. Plant Physiol, 2007 Feb. PMID 17208962, Free PMC Article
  4. Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation. de Lucas M, et al. Plant Cell, 2016 Oct. PMID 27650334, Free PMC Article
  5. Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors. Sparks EE, et al. Dev Cell, 2016 Dec 5. PMID 27923776, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. RGL2-containing protein complex can bind the promoter of GATA12 and thereby regulate its expression
    Title: A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_122484.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within circadian rhythm IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within response to light stimulus IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in tracheary element differentiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
GATA transcription factor 12
NP_197955.1
  • GATA transcription factor 12 (GATA12); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 9 (TAIR:AT4G32890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    9004236..9005941 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122484.3 → NP_197955.1  GATA transcription factor 12 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197955.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0SVQ5, P69781
    UniProtKB/TrEMBL
    A0A178UTT9
    Conserved Domains (2) summary
    smart00401
    Location:217 → 265
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    pfam00320
    Location:221 → 256
    GATA; GATA zinc finger
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P69781.1

Gene LinkOut

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