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RPS11-BETA ribosomal protein S11-beta [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832439, updated on 11-Oct-2018

Summary

Gene symbol
RPS11-BETA
Gene description
ribosomal protein S11-beta
Primary source
Araport:AT5G23740
Locus tag
AT5G23740
Gene type
protein coding
RNA name
ribosomal protein S11-beta
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MRO11.22; MRO11_22; RIBOSOMAL PROTEIN S11; ribosomal protein S11-beta
Summary
Encodes a putative ribosomal protein S11 (RPS11-beta).

Genomic context

See RPS11-BETA in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (8007921..8009436, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene ncRNA Neighboring gene Remorin family protein Neighboring gene Copper transport protein family Neighboring gene agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 8)

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

  • Homologs of the RPS11-BETA gene: The RPS11-BETA gene is conserved in human, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, rice, and frog.
  • Orthologs
NM_122279.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
rRNA binding IEA
Inferred from Electronic Annotation
more info
 
structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
structural constituent of ribosome ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Process Evidence Code Pubs
translation IEA
Inferred from Electronic Annotation
more info
 
translation ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Component Evidence Code Pubs
cytoplasm ISM
Inferred from Sequence Model
more info
 
NOT cytosol RCA
inferred from Reviewed Computational Analysis
more info
PubMed 
cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosolic small ribosomal subunit ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
membrane IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
ribosomal protein S11-beta
NP_197763.1
  • ribosomal protein S11-beta (RPS11-BETA); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S17, archaeal (InterPro:IPR019978), Ribosomal protein S17, conserved site (InterPro:IPR019979), Ribosomal protein S17 (InterPro:IPR000266); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT3G48930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    8007921..8009436 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122279.4NP_197763.1  ribosomal protein S11-beta [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197763.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P42733
    UniProtKB/TrEMBL
    A0A178UPD3
    Conserved Domains (3) summary
    COG0186
    Location:62144
    RpsQ; Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]
    PTZ00241
    Location:1156
    PTZ00241; 40S ribosomal protein S11; Provisional
    pfam16205
    Location:472
    Ribosomal_S17_N; Ribosomal_S17 N-terminal
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