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AKINBETA1 5'-AMP-activated protein kinase beta-2 subunit protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832243, updated on 11-Oct-2018

Summary

Gene symbol
AKINBETA1
Gene description
5'-AMP-activated protein kinase beta-2 subunit protein
Primary source
Araport:AT5G21170
Locus tag
AT5G21170
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
KINbeta1; T10F18.200; T10F18_200
Summary
Encodes AKINbeta1, a subunit of the SnRK1 kinase (Sucrose non-fermenting-1-related protein kinase). Involved in regulation of nitrogen and sugar metabolism.

Genomic context

See AKINBETA1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (7205477..7208613)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene LA RNA-binding protein Neighboring gene miscRNA Neighboring gene protein kinase family protein Neighboring gene calmodulin 6

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

NM_001036841.2
NM_001343699.1
NM_122124.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
AMP-activated protein kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
ATP binding IEA
Inferred from Electronic Annotation
more info
 
kinase activity IEA
Inferred from Electronic Annotation
more info
 
maltose binding IDA
Inferred from Direct Assay
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein kinase regulator activity IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 
cellular response to nitrogen levels IEP
Inferred from Expression Pattern
more info
PubMed 
fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
nitrate assimilation IEA
Inferred from Electronic Annotation
more info
 
phosphorylation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
chloroplast IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm ISM
Inferred from Sequence Model
more info
 
nucleotide-activated protein kinase complex IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
5'-AMP-activated protein kinase beta-2 subunit protein
NP_001031918.2
  • AKINBETA1; FUNCTIONS IN: AMP-activated protein kinase activity; INVOLVED IN: N-terminal protein myristoylation, cellular response to nitrogen levels; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 5-AMP-activated protein kinase, beta subunit, interaction domain (InterPro:IPR006828); BEST Arabidopsis thaliana protein match is: 5'-AMP-activated protein kinase beta-2 subunit protein (TAIR:AT4G16360.3); Has 674 Blast hits to 666 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 246; Fungi - 149; Plants - 202; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
NP_197615.1
  • AKINBETA1; FUNCTIONS IN: AMP-activated protein kinase activity; INVOLVED IN: N-terminal protein myristoylation, cellular response to nitrogen levels; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 5-AMP-activated protein kinase, beta subunit, interaction domain (InterPro:IPR006828); BEST Arabidopsis thaliana protein match is: 5'-AMP-activated protein kinase beta-2 subunit protein (TAIR:AT4G16360.3); Has 697 Blast hits to 689 proteins in 198 species: Archae - 0; Bacteria - 3; Metazoa - 248; Fungi - 167; Plants - 204; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    7205477..7208613
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122124.4NP_197615.1  5'-AMP-activated protein kinase beta-2 subunit protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197615.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q84VQ1
    UniProtKB/TrEMBL
    Q29Q48
    Conserved Domains (2) summary
    pfam04739
    Location:213279
    AMPKBI; 5'-AMP-activated protein kinase beta subunit, interaction domain
    pfam16561
    Location:101184
    AMPK1_CBM; Glycogen recognition site of AMP-activated protein kinase
  2. NM_001036841.2NP_001031918.2  5'-AMP-activated protein kinase beta-2 subunit protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031918.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q2V357
    Conserved Domains (2) summary
    smart01010
    Location:233318
    AMPKBI; 5'-AMP-activated protein kinase beta subunit, interation domain
    pfam16561
    Location:138221
    AMPK1_CBM; Glycogen recognition site of AMP-activated protein kinase
  3. NM_001343699.1NP_001330544.1  5'-AMP-activated protein kinase beta-2 subunit protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BB45
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