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Cpn60alpha2 TCP-1/cpn60 chaperonin family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832000, updated on 12-Aug-2018

Summary

Gene symbol
Cpn60alpha2
Gene description
TCP-1/cpn60 chaperonin family protein
Primary source
Araport:AT5G18820
Locus tag
AT5G18820
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
chaperonin-60alpha2; EMB3007; embryo defective 3007; F17K4.70; F17K4_70
Summary
Encodes a subunit of chloroplasts chaperonins that are involved in mediating the folding of newly synthesized, translocated, or stress-denatured proteins. Cpn60 subunits are: Cpn60alpha1 (At2g28000), AtCpn60alpha2 (At5g18820), AtCpn60beta1 (At1g55490), AtCpn60beta2 (At3g13470), AtCpn60beta3 (At5g56500), AtCpn60beta4 (At1g26230).

Genomic context

See Cpn60alpha2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Sequence:
Chromosome: 5; NC_003076.8 (6271386..6274599)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Cox19-like CHCH family protein Neighboring gene SC35-like splicing factor 28 Neighboring gene squamosa promoter binding protein-like 7 Neighboring gene Major facilitator superfamily protein Neighboring gene Low-density receptor-like protein

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_001343572.1
NM_121887.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
unfolded protein binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
'de novo' protein folding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
embryo development ending in seed dormancy NAS
Non-traceable Author Statement
more info
 
mitochondrion organization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein refolding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
chloroplast IDA
Inferred from Direct Assay
more info
PubMed 
chloroplast ISM
Inferred from Sequence Model
more info
 
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
TCP-1/cpn60 chaperonin family protein
NP_197383.1
  • embryo defective 3007 (EMB3007); FUNCTIONS IN: ATP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: chaperonin-60alpha (TAIR:AT2G28000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    6271386..6274599
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001343571.1NP_001330414.1  TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BAS2
  2. NM_121887.3NP_197383.1  TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197383.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56XV8
    Conserved Domains (2) summary
    PRK12850
    Location:35567
    groEL; chaperonin GroEL; Reviewed
    cd03344
    Location:36557
    GroEL; GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found ...
  3. NM_001343572.1NP_001330413.1  TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BAR0
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