U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Zinc-binding dehydrogenase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831561, updated on 18-Sep-2024
Official Full Name
Zinc-binding dehydrogenase family protein
Primary source
TAIR:AT5G16980
Locus tag
AT5G16980
See related
Araport:AT5G16980
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2K13.130; F2K13_130
NEW
Try the new Gene table
Try the new Transcript table
Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (5578846..5581311, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Zinc-binding dehydrogenase family protein Neighboring gene alkenal reductase Neighboring gene Zinc-binding dehydrogenase family protein Neighboring gene Zinc-binding dehydrogenase family protein

Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Arabidopsis thaliana NADPH oxidoreductase homologs confer tolerance of yeasts toward the thiol-oxidizing drug diamide. Babiychuk E, et al. J Biol Chem, 1995 Nov 3. PMID 7592828
  2. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Products Interactant Other Gene Complex Source Pubs Description
NM_001343475.1
NM_121704.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within response to oxidative stress IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in plastid HDA PubMed 
Preferred Names
Zinc-binding dehydrogenase family protein
NP_001190322.1
  • Zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: response to oxidative stress, response to cyclopentenone; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Polyketide synthase, enoylreductase (InterPro:IPR020843), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alkenal reductase (TAIR:AT5G16970.1).
NP_001318577.1
  • Zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: response to oxidative stress, response to cyclopentenone; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alkenal reductase (TAIR:AT5G16970.1); Has 15533 Blast hits to 15515 proteins in 1800 species: Archae - 151; Bacteria - 8738; Metazoa - 804; Fungi - 1160; Plants - 566; Viruses - 0; Other Eukaryotes - 4114 (source: NCBI BLink).

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    5578846..5581311 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203393.2 → NP_001190322.1  Zinc-binding dehydrogenase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190322.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178ULY7, F4KFK3
    Conserved Domains (2) summary
    PLN03154
    Location:2 → 305
    PLN03154; putative allyl alcohol dehydrogenase; Provisional
    cl16912
    Location:4 → 302
    MDR; Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

  2. NM_001343475.1 → NP_001318577.1  Zinc-binding dehydrogenase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178ULY7, Q8GWT2
    Conserved Domains (1) summary
    cl16912
    Location:10 → 236
    MDR; Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

  3. NM_121704.3 → NP_197200.2  Zinc-binding dehydrogenase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197200.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178ULY7, Q8GWT2
    Conserved Domains (1) summary
    cl16912
    Location:10 → 236
    MDR; Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.