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FRL1 FRIGIDA like 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831493, updated on 6-May-2021

Summary

Gene symbol
FRL1
Gene description
FRIGIDA like 1
Primary source
Araport:AT5G16320
Locus tag
AT5G16320
Gene type
protein coding
RNA name
FRIGIDA like 1
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
FRIGIDA like 1; MQK4.4; MQK4_4
Summary
family member of FRI-related genes that is required for the winter-annual habit. Genbank accession BK004884
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Genomic context

See FRL1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (5344495..5346106)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Vps51/Vps67 family (components of vesicular transport) protein Neighboring gene Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 Neighboring gene ncRNA Neighboring gene NC domain-containing protein-like protein Neighboring gene miscRNA

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_121637.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
FRIGIDA like 1
NP_197136.1
  • FRIGIDA like 1 (FRL1); CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA like 2 (TAIR:AT1G31814.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    5344495..5346106
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121637.4NP_197136.1  FRIGIDA like 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197136.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FFF1
    Conserved Domains (1) summary
    pfam07899
    Location:95368
    Frigida; Frigida-like protein
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