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CYCD4;2 cyclin d4;2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830908, updated on 6-May-2021

Summary

Gene symbol
CYCD4;2
Gene description
cyclin d4;2
Primary source
Araport:AT5G10440
Locus tag
AT5G10440
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
cyclin d4;2; F12B17.210; F12B17_210
Summary
Encodes a cyclin involved in cell proliferation during stomatal cell lineage development.
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Genomic context

See CYCD4;2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (3280487..3282553, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ENTH/ANTH/VHS superfamily protein Neighboring gene MATE efflux family protein Neighboring gene transmembrane protein Neighboring gene arabinogalactan protein 4 Neighboring gene G-box regulating factor 6 Neighboring gene tRNA

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_001343114.1
NM_121082.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cyclin-dependent protein serine/threonine kinase regulator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
part_of cyclin-dependent protein kinase holoenzyme complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
cyclin d4;2
NP_196606.3
  • cyclin d4;2 (CYCD4;2); CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN D4;1 (TAIR:AT5G65420.1); Has 2823 Blast hits to 2820 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 1255; Fungi - 334; Plants - 962; Viruses - 9; Other Eukaryotes - 263 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    3280487..3282553 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121082.5NP_196606.3  cyclin d4;2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196606.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WQN9
    Conserved Domains (2) summary
    pfam00134
    Location:37169
    Cyclin_N; Cyclin, N-terminal domain
    pfam02984
    Location:171281
    Cyclin_C; Cyclin, C-terminal domain
  2. NM_001343114.1NP_001332308.1  cyclin d4;2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BGJ6
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