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SLG1 Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830748, updated on 22-Feb-2019

Summary

Gene symbol
SLG1
Gene description
Tetratricopeptide repeat (TPR)-like superfamily protein
Primary source
Araport:AT5G08490
Locus tag
AT5G08490
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F8L15.18; SLOW GROWTH 1

Genomic context

See SLG1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (2743330..2748019, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene peroxisome 1 Neighboring gene VQ motif-containing protein Neighboring gene Transmembrane CLPTM1 family protein Neighboring gene Defensin-like (DEFL) family protein

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
RNA modification IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrial mRNA modification IMP
Inferred from Mutant Phenotype
more info
PubMed 
response to abscisic acid IMP
Inferred from Mutant Phenotype
more info
PubMed 
response to water deprivation IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
mitochondrion IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrion IMP
Inferred from Mutant Phenotype
more info
PubMed 
mitochondrion ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
Tetratricopeptide repeat (TPR)-like superfamily protein
NP_001318512.1
  • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21300.1); Has 47451 Blast hits to 12929 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 30; Plants - 46987; Viruses - 0; Other Eukaryotes - 385 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    2743330..2748019 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001343009.1NP_001331758.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BEU9
  2. NM_001343008.1NP_001318512.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FNN9
  3. NM_001343012.1NP_001331755.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BEU2
  4. NM_001343011.1NP_001331756.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BEV0
  5. NM_001343010.1NP_001331757.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FNN9
  6. NM_001343013.1NP_001331754.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BEU9
  7. NM_001343014.1NP_001331753.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BEU9
  8. NM_120934.2NP_196466.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196466.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FNN9
    Conserved Domains (5) summary
    TIGR00756
    Location:634667
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:635662
    PPR; PPR repeat [structural motif]
    pfam01535
    Location:503528
    PPR; PPR repeat
    pfam13041
    Location:632680
    PPR_2; PPR repeat family
    pfam14432
    Location:806845
    DYW_deaminase; DYW family of nucleic acid deaminases
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