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slrA anti-repressor of SlrR [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 8303165, updated on 6-Oct-2023
Gene symbol
slrA
Gene description
anti-repressor of SlrR
Locus tag
BSU_38229
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU38229
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Sequence:
NC_000964.3 (3923319..3923477)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene putative cell wall glycosylation protein Neighboring gene transcriptional regulator of slrA (biofilm formation) Neighboring gene subunit of acetate transporter as a volatile signal for biofilm formation Neighboring gene acetate Na+-dependent symporter subunit involved in volatile signal for biofilm formation Neighboring gene putative sulfur oxido-reductase

Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Expression of multiple Bacillus subtilis genes is controlled by decay of slrA mRNA from Rho-dependent 3' ends. Liu B, et al. Nucleic Acids Res, 2016 Apr 20. PMID 26857544, Free PMC Article
  2. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  3. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  4. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
  5. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. slrA transcript is a direct target of polynucleotide phosphorylase and that regulation of RNA turnover is a major determinant of motility gene expression.
    Title: Expression of multiple Bacillus subtilis genes is controlled by decay of slrA mRNA from Rho-dependent 3' ends.
Submit: New GeneRIF Correction

Homology

Preferred Names
anti-repressor of SlrR
YP_003097794.1
  • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 18647168, 26857544; Product type r: regulator

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_003097794.1 anti-repressor of SlrR [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for YP_003097794.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0D1KSM0
    Conserved Domains (1) summary
    pfam08671
    Location:9 → 36
    SinI; Anti-repressor SinI
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0C8M5.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases