Format

Send to:

Choose Destination

AT4G30800 Nucleic acid-binding, OB-fold-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829203, updated on 11-Oct-2018

Summary

Gene symbol
AT4G30800
Gene description
Nucleic acid-binding, OB-fold-like protein
Primary source
Araport:AT4G30800
Locus tag
AT4G30800
Gene type
protein coding
RNA name
Nucleic acid-binding, OB-fold-like protein
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T10C21.1

Genomic context

See AT4G30800 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Sequence:
Chromosome: 4; NC_003075.7 (15000960..15002671)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ATP-dependent DNA helicase Neighboring gene autophagy-like protein Neighboring gene ncRNA Neighboring gene serine carboxypeptidase-like 29 Neighboring gene cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein

Pathways from BioSystems

General gene information

Homology

NM_119226.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
rRNA binding IEA
Inferred from Electronic Annotation
more info
 
structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
structural constituent of ribosome ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Process Evidence Code Pubs
translation IEA
Inferred from Electronic Annotation
more info
 
translation ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Component Evidence Code Pubs
cytoplasm ISM
Inferred from Sequence Model
more info
 
NOT cytosol RCA
inferred from Reviewed Computational Analysis
more info
PubMed 
cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosolic small ribosomal subunit IDA
Inferred from Direct Assay
more info
PubMed 
cytosolic small ribosomal subunit ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 

General protein information

Preferred Names
Nucleic acid-binding, OB-fold-like protein
NP_194809.1
  • Nucleic acid-binding, OB-fold-like protein; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S17, archaeal (InterPro:IPR019978), Ribosomal protein S17, conserved site (InterPro:IPR019979), Ribosomal protein S17 (InterPro:IPR000266); BEST Arabidopsis thaliana protein match is: ribosomal protein S11-beta (TAIR:AT5G23740.1); Has 1377 Blast hits to 1375 proteins in 498 species: Archae - 239; Bacteria - 304; Metazoa - 305; Fungi - 147; Plants - 148; Viruses - 0; Other Eukaryotes - 234 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    15000960..15002671
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119226.4NP_194809.1  Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194809.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O65569
    UniProtKB/TrEMBL
    A0A178V1P2
    Conserved Domains (3) summary
    COG0186
    Location:62144
    RpsQ; Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]
    PTZ00241
    Location:1156
    PTZ00241; 40S ribosomal protein S11; Provisional
    pfam16205
    Location:472
    Ribosomal_S17_N; Ribosomal_S17 N-terminal
Support Center