U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

EMB140 EMBRYO DEFECTIVE 140 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828529, updated on 7-Sep-2023

Summary

Go to the top of the page Help
Gene symbol
EMB140
Gene description
EMBRYO DEFECTIVE 140
Primary source
Araport:AT4G24270
Locus tag
AT4G24270
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
EMBRYO DEFECTIVE 140; T22A6.100; T22A6_100
Summary
A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 4
Exon count:
15
Sequence:
Chromosome: 4; NC_003075.7 (12581518..12587458, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene glycosyl hydrolase 9A3 Neighboring gene homeobox protein Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene chloroplast heat shock protein 70-1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Serrate-Associated Protein 1, a splicing-related protein, promotes miRNA biogenesis in Arabidopsis. Li M, et al. New Phytol, 2021 Dec. PMID 34449907, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

NM_001341661.1
NM_118560.4
NM_179220.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables U6 snRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within embryo development ending in seed dormancy NAS
Non-traceable Author Statement
more info
  
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
EMBRYO DEFECTIVE 140
NP_194158.3
  • EMBRYO DEFECTIVE 140 (EMB140); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lsm interaction (InterPro:IPR008669), RNA-processing protein, HAT helix (InterPro:IPR003107), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative (TAIR:AT5G45990.1); Has 6638 Blast hits to 6081 proteins in 560 species: Archae - 0; Bacteria - 845; Metazoa - 2454; Fungi - 1660; Plants - 947; Viruses - 0; Other Eukaryotes - 732 (source: NCBI BLink).
NP_849551.1
  • EMBRYO DEFECTIVE 140 (EMB140); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lsm interaction (InterPro:IPR008669), RNA-processing protein, HAT helix (InterPro:IPR003107), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative (TAIR:AT5G45990.1); Has 6865 Blast hits to 6296 proteins in 569 species: Archae - 0; Bacteria - 876; Metazoa - 2538; Fungi - 1681; Plants - 1001; Viruses - 0; Other Eukaryotes - 769 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    12581518..12587458 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001341660.1 → NP_001328782.1  EMBRYO DEFECTIVE 140 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B5P4, A0A7G2EZX2
    Conserved Domains (3) summary
    smart00360
    Location:652 → 692
    RRM; RNA recognition motif
    COG0724
    Location:561 → 692
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    COG5107
    Location:53 → 567
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

  2. NM_118560.4 → NP_194158.3  EMBRYO DEFECTIVE 140 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194158.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UYW1, A0A5S9XVE4, F4JQ75
    Conserved Domains (4) summary
    smart00360
    Location:652 → 723
    RRM; RNA recognition motif
    COG0724
    Location:561 → 755
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    COG5107
    Location:53 → 567
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
    pfam05391
    Location:798 → 816
    Lsm_interact; Lsm interaction motif

  3. NM_179220.2 → NP_849551.1  EMBRYO DEFECTIVE 140 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849551.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UXQ4, F4JQ74
    Conserved Domains (5) summary
    smart00360
    Location:652 → 723
    RRM; RNA recognition motif
    COG0724
    Location:561 → 754
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    COG5107
    Location:53 → 567
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
    pfam05391
    Location:797 → 815
    Lsm_interact; Lsm interaction motif
    pfam05843
    Location:455 → 557
    Suf; Suppressor of forked protein (Suf)

  4. NM_001341661.1 → NP_001328783.1  EMBRYO DEFECTIVE 140 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B5P4, A0A7G2EZX2
    Conserved Domains (3) summary
    smart00360
    Location:652 → 692
    RRM; RNA recognition motif
    COG0724
    Location:561 → 692
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    COG5107
    Location:53 → 567
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials
Tools