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AT4G20860 FAD-binding Berberine family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827834, updated on 15-Oct-2023

Summary

Gene symbol
AT4G20860
Gene description
FAD-binding Berberine family protein
Primary source
Araport:AT4G20860
Locus tag
AT4G20860
See related
TAIR:AT4G20860
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T13K14.20; T13K14_20
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Genomic context

See AT4G20860 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (11172622..11174467)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene FAD-binding Berberine family protein Neighboring gene tripeptidyl peptidase ii Neighboring gene fatty acid hydroxylase 2 Neighboring gene miscRNA Neighboring gene miscRNA

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
FAD-binding Berberine family protein
NP_193818.1
  • FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: response to cyclopentenone; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT5G44360.1); Has 5055 Blast hits to 4866 proteins in 819 species: Archae - 58; Bacteria - 2286; Metazoa - 6; Fungi - 1739; Plants - 670; Viruses - 0; Other Eukaryotes - 296 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    11172622..11174467
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118204.2NP_193818.1  FAD-binding Berberine family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193818.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56YQ4, Q94KD7, Q9SUC6
    UniProtKB/TrEMBL
    A0A178V0H8
    Conserved Domains (3) summary
    COG0277
    Location:81529
    GlcD; FAD/FMN-containing dehydrogenase [Energy production and conversion]
    pfam08031
    Location:470527
    BBE; Berberine and berberine like
    cl19922
    Location:81218
    FAD_binding_4; FAD binding domain