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MEE55 Serinc-domain containing serine and sphingolipid biosynthesis protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826965, updated on 6-May-2021

Summary

Gene symbol
MEE55
Gene description
Serinc-domain containing serine and sphingolipid biosynthesis protein
Primary source
Araport:AT4G13345
Locus tag
AT4G13345
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
maternal effect embryo arrest 55
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Genomic context

See MEE55 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
12
Sequence:
Chromosome: 4; NC_003075.7 (7765060..7769763)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene hypothetical protein Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene NSP (nuclear shuttle protein)-interacting GTPase Neighboring gene ATP-dependent caseinolytic (Clp) protease/crotonase family protein Neighboring gene serine/arginine repetitive matrix protein, putative (DUF936) Neighboring gene Heavy metal transport/detoxification superfamily protein

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_001340853.1
NM_001340854.1
NM_001340855.1
NM_001340856.1
NM_117408.4
NM_179042.1

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
acts_upstream_of_or_within embryo development ending in seed dormancy IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
Serinc-domain containing serine and sphingolipid biosynthesis protein
NP_567403.1
  • maternal effect embryo arrest 55 (MEE55); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana protein match is: Serinc-domain containing serine and sphingolipid biosynthesis protein (TAIR:AT3G24460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_849373.1
  • maternal effect embryo arrest 55 (MEE55); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana protein match is: Serinc-domain containing serine and sphingolipid biosynthesis protein (TAIR:AT3G24460.1); Has 836 Blast hits to 765 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 450; Fungi - 174; Plants - 143; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    7765060..7769763
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001340852.1NP_001328594.1  Serinc-domain containing serine and sphingolipid biosynthesis protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B546
  2. NM_117408.4NP_567403.1  Serinc-domain containing serine and sphingolipid biosynthesis protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567403.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q93YS8
    Conserved Domains (1) summary
    pfam03348
    Location:66392
    Serinc; Serine incorporator (Serinc)
  3. NM_001340853.1NP_001328593.1  Serinc-domain containing serine and sphingolipid biosynthesis protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B544
  4. NM_001340854.1NP_001328592.1  Serinc-domain containing serine and sphingolipid biosynthesis protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B559
  5. NM_179042.1NP_849373.1  Serinc-domain containing serine and sphingolipid biosynthesis protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849373.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JT04
    Conserved Domains (1) summary
    pfam03348
    Location:66392
    Serinc; Serine incorporator (Serinc)
  6. NM_001340855.1NP_001328591.1  Serinc-domain containing serine and sphingolipid biosynthesis protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JT04
  7. NM_001340856.1NP_001328590.1  Serinc-domain containing serine and sphingolipid biosynthesis protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B546
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