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ORP2B OSBP(oxysterol binding protein)-related protein 2B [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826858, updated on 11-Oct-2018

Summary

Gene symbol
ORP2B
Gene description
OSBP(oxysterol binding protein)-related protein 2B
Primary source
Araport:AT4G12460
Locus tag
AT4G12460
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
OSBP(oxysterol binding protein)-related protein 2B; T1P17.50; T1P17_50

Genomic context

See ORP2B in Genome Data Viewer
Location:
chromosome: 4
Exon count:
11
Sequence:
Chromosome: 4; NC_003075.7 (7391208..7396511)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene zinc finger (C2H2 type) family protein Neighboring gene azelaic acid induced 1 Neighboring gene hypothetical protein Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

NM_001084907.1
NM_001340778.1
NM_001340779.1
NM_001340780.1
NM_001340781.1
NM_117316.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
lipid binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
oxysterol binding ISS
Inferred from Sequence or Structural Similarity
more info
 
sterol binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
sterol transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
steroid metabolic process ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
intracellular membrane-bounded organelle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
OSBP(oxysterol binding protein)-related protein 2B
NP_001078376.1
  • OSBP(oxysterol binding protein)-related protein 2B (ORP2B); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 2A (TAIR:AT4G22540.1); Has 2282 Blast hits to 2224 proteins in 215 species: Archae - 0; Bacteria - 0; Metazoa - 1139; Fungi - 602; Plants - 276; Viruses - 0; Other Eukaryotes - 265 (source: NCBI BLink).
NP_192983.2
  • OSBP(oxysterol binding protein)-related protein 2B (ORP2B); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 2A (TAIR:AT4G22540.1); Has 2708 Blast hits to 2476 proteins in 219 species: Archae - 0; Bacteria - 2; Metazoa - 1436; Fungi - 690; Plants - 296; Viruses - 0; Other Eukaryotes - 284 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    7391208..7396511
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001340775.1NP_001327964.1  OSBP(oxysterol binding protein)-related protein 2B [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B361
  2. NM_001340776.1NP_001327965.1  OSBP(oxysterol binding protein)-related protein 2B [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B361
  3. NM_001340777.1NP_001327966.1  OSBP(oxysterol binding protein)-related protein 2B [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B380
  4. NM_117316.3NP_192983.2  OSBP(oxysterol binding protein)-related protein 2B [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192983.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SU36
    Conserved Domains (3) summary
    pfam00169
    Location:30149
    PH; PH domain
    pfam01237
    Location:323662
    Oxysterol_BP; Oxysterol-binding protein
    cl17171
    Location:28162
    PH-like; Pleckstrin homology-like domain
  5. NM_001340778.1NP_001327967.1  OSBP(oxysterol binding protein)-related protein 2B [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B371
  6. NM_001340779.1NP_001327968.1  OSBP(oxysterol binding protein)-related protein 2B [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SU36
    UniProtKB/TrEMBL
    A0A1P8B378
  7. NM_001340780.1NP_001327962.1  OSBP(oxysterol binding protein)-related protein 2B [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SU36
    Conserved Domains (3) summary
    pfam00169
    Location:30149
    PH; PH domain
    pfam01237
    Location:323662
    Oxysterol_BP; Oxysterol-binding protein
    cl17171
    Location:28162
    PH-like; Pleckstrin homology-like domain
  8. NM_001084907.1NP_001078376.1  OSBP(oxysterol binding protein)-related protein 2B [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078376.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SU36
    Conserved Domains (1) summary
    pfam01237
    Location:1334
    Oxysterol_BP; Oxysterol-binding protein
  9. NM_001340781.1NP_001327963.1  OSBP(oxysterol binding protein)-related protein 2B [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B361
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