Format

Send to:

Choose Destination

EMB2369 tRNA synthetase class I (I, L, M and V) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825755, updated on 11-Oct-2018

Summary

Gene symbol
EMB2369
Gene description
tRNA synthetase class I (I, L, M and V) family protein
Primary source
Araport:AT4G04350
Locus tag
AT4G04350
Gene type
protein coding
RNA name
tRNA synthetase class I (I, L, M and V) family protein
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
EMBRYO DEFECTIVE 2369; T19B17.7; T19B17_7

Genomic context

See EMB2369 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
20
Sequence:
Chromosome: 4; NC_003075.7 (2128090..2133150)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene malonyl-CoA decarboxylase family protein Neighboring gene Chaperonin-like RbcX protein Neighboring gene ERD (early-responsive to dehydration stress) family protein Neighboring gene transmembrane protein, putative (DUF1068) Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene miscRNA

Pathways from BioSystems

General gene information

Homology

NM_116673.7

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
ATP binding ISS
Inferred from Sequence or Structural Similarity
more info
 
aminoacyl-tRNA editing activity IEA
Inferred from Electronic Annotation
more info
 
aminoacyl-tRNA ligase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
leucine-tRNA ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
embryo development ending in seed dormancy IMP
Inferred from Mutant Phenotype
more info
PubMed 
embryo development ending in seed dormancy NAS
Non-traceable Author Statement
more info
 
leucyl-tRNA aminoacylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrial translation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
tRNA aminoacylation for protein translation ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
chloroplast IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
chloroplast IDA
Inferred from Direct Assay
more info
PubMed 
chloroplast stroma IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrion IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
tRNA synthetase class I (I, L, M and V) family protein
NP_192344.1
  • EMBRYO DEFECTIVE 2369 (EMB2369); FUNCTIONS IN: aminoacyl-tRNA ligase activity, nucleotide binding, leucine-tRNA ligase activity, ATP binding; INVOLVED IN: tRNA aminoacylation for protein translation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial (InterPro:IPR002302), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080); BEST Arabidopsis thaliana protein match is: tRNA synthetase class I (I, L, M and V) family protein (TAIR:AT5G49030.1); Has 40727 Blast hits to 36917 proteins in 3154 species: Archae - 1372; Bacteria - 23600; Metazoa - 846; Fungi - 790; Plants - 334; Viruses - 3; Other Eukaryotes - 13782 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    2128090..2133150
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116673.7NP_192344.1  tRNA synthetase class I (I, L, M and V) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192344.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9XEA0
    Conserved Domains (5) summary
    cd07958
    Location:769880
    Anticodon_Ia_Leu_BEm; Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases
    cd00812
    Location:116307
    LeuRS_core; catalytic core domain of leucyl-tRNA synthetases
    PLN02563
    Location:6970
    PLN02563; aminoacyl-tRNA ligase
    pfam13603
    Location:303498
    tRNA-synt_1_2; Leucyl-tRNA synthetase, Domain 2
    cl00015
    Location:730766
    nt_trans; nucleotidyl transferase superfamily
Support Center