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CKB3 casein kinase II beta chain 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825196, updated on 10-Oct-2019

Summary

Gene symbol
CKB3
Gene description
casein kinase II beta chain 3
Primary source
Araport:AT3G60250
Locus tag
AT3G60250
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
casein kinase II beta chain 3; casein kinase II beta chain 3
Summary
Regulatory (beta) subunit of the protein kinase CK2. Involved in regulation of the circadian clock in Arabidopsis

Genomic context

See CKB3 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (22270270..22272173, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4G Neighboring gene Zinc-binding ribosomal protein family protein Neighboring gene ELMO/CED-12 family protein Neighboring gene Cupredoxin superfamily protein

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

  • Homologs of the CKB3 gene: The CKB3 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, zebrafish, fruit fly, C.elegans, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, rice, and frog.
  • Orthologs
NM_001125389.2
NM_001340030.1
NM_115889.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein kinase regulator activity IDA
Inferred from Direct Assay
more info
PubMed 
transcription factor binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
regulation of circadian rhythm IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of protein kinase activity IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
cytosol IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus ISM
Inferred from Sequence Model
more info
 
protein kinase CK2 complex IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
casein kinase II beta chain 3
NP_001118861.1
  • casein kinase II beta chain 3 (CKB3); CONTAINS InterPro DOMAIN/s: Casein kinase II, regulatory subunit, alpha-helical (InterPro:IPR016149), Casein kinase II, regulatory subunit, beta-sheet (InterPro:IPR016150), Casein kinase II, regulatory subunit (InterPro:IPR000704); BEST Arabidopsis thaliana protein match is: casein kinase II beta subunit 4 (TAIR:AT2G44680.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_191584.1
  • casein kinase II beta chain 3 (CKB3); CONTAINS InterPro DOMAIN/s: Casein kinase II, regulatory subunit, alpha-helical (InterPro:IPR016149), Casein kinase II, regulatory subunit, beta-sheet (InterPro:IPR016150), Casein kinase II, regulatory subunit (InterPro:IPR000704); BEST Arabidopsis thaliana protein match is: casein kinase II beta subunit 4 (TAIR:AT2G44680.1); Has 1086 Blast hits to 1084 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 424; Fungi - 285; Plants - 156; Viruses - 0; Other Eukaryotes - 221 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    22270270..22272173 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001125389.2NP_001118861.1  casein kinase II beta chain 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001118861.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VGJ0, B3H4P8
    Conserved Domains (1) summary
    pfam01214
    Location:90271
    CK_II_beta; Casein kinase II regulatory subunit
  2. NM_115889.5NP_191584.1  casein kinase II beta chain 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191584.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O81275
    Conserved Domains (1) summary
    pfam01214
    Location:90272
    CK_II_beta; Casein kinase II regulatory subunit
  3. NM_001340030.1NP_001325549.1  casein kinase II beta chain 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LLK5
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