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BG1 beta-1,3-glucanase 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824894, updated on 15-Feb-2024

Summary

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Gene symbol
BG1
Gene description
beta-1,3-glucanase 1
Primary source
Araport:AT3G57270
Locus tag
AT3G57270
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
''beta-1; 3-glucanase 1; 3-glucanase 1''; beta-1
Summary
encodes a member of glycosyl hydrolase family 17
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Genomic context

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See BG1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (21191237..21193189, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Emsy N Terminus (ENT) domain-containing protein Neighboring gene beta-1,3-glucanase 2 Neighboring gene Transmembrane proteins 14C Neighboring gene eukaryotic translation initiation factor 3E Neighboring gene DNA helicase INO80-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
  2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_115587.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables glucan endo-1,3-beta-D-glucosidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
beta-1,3-glucanase 1
NP_191286.1
  • ''beta-1,3-glucanase 1'' (BG1); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 2 (TAIR:AT3G57260.1); Has 2220 Blast hits to 2205 proteins in 171 species: Archae - 0; Bacteria - 4; Metazoa - 4; Fungi - 67; Plants - 2133; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    21191237..21193189 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115587.2 → NP_191286.1  beta-1,3-glucanase 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191286.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0MF30, Q8LG04, Q9M2M0
    UniProtKB/TrEMBL
    A0A5S9XLU8, A0A654FIM0
    Conserved Domains (1) summary
    pfam00332
    Location:27 → 339
    Glyco_hydro_17; Glycosyl hydrolases family 17
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M2M0.1

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