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MICPUN_83090 glycoside hydrolase family 5 protein [ Micromonas commoda ]

Gene ID: 8244349, updated on 19-Jun-2024

Summary

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Gene symbol
MICPUN_83090
Gene description
glycoside hydrolase family 5 protein
Locus tag
MICPUN_83090
Gene type
protein coding
RNA name
glycoside hydrolase family 5 protein
RefSeq status
PROVISIONAL
Organism
Micromonas commoda (strain: RCC299)
Lineage
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Genomic context

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See MICPUN_83090 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Sequence:
Chromosome: 6; NC_013043.1 (1401439..1402725, complement)

Chromosome 6 - NC_013043.1Genomic Context describing neighboring genes Neighboring gene predicted protein Neighboring gene uncharacterized protein Neighboring gene predicted protein Neighboring gene predicted protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013043.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Worden AZ, et al. Science, 2009 Apr 10. PMID 19359590
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
glycoside hydrolase family 5 protein
XP_002503411.1
  • related to b-mannosidases / b-mannanases

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013043.1 Reference assembly

    Range
    1401439..1402725 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002503365.1 → XP_002503411.1  glycoside hydrolase family 5 protein, partial [Micromonas commoda]

    See identical proteins and their annotated locations for XP_002503411.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C1E9E6
    Conserved Domains (1) summary
    COG3934
    Location:68 → 381
    COG3934; Endo-1,4-beta-mannosidase [Carbohydrate transport and metabolism]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials