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MICPUN_58085 cellulase [ Micromonas commoda ]

Gene ID: 8242770, updated on 19-Jun-2024

Summary

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Gene symbol
MICPUN_58085
Gene description
cellulase
Locus tag
MICPUN_58085
Gene type
protein coding
RNA name
cellulase
RefSeq status
PROVISIONAL
Organism
Micromonas commoda (strain: RCC299)
Lineage
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Genomic context

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See MICPUN_58085 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_013041.1 (1242684..1244132)

Chromosome 4 - NC_013041.1Genomic Context describing neighboring genes Neighboring gene ribosomal l9-like protein Neighboring gene predicted protein Neighboring gene hypothetical protein Neighboring gene predicted protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013041.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Worden AZ, et al. Science, 2009 Apr 10. PMID 19359590
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
cellulase
XP_002501484.1
  • elated to b-mannosidases / b-mannanases; glycosyl hydrolase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013041.1 Reference assembly

    Range
    1242684..1244132
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002501438.1 → XP_002501484.1  cellulase [Micromonas commoda]

    See identical proteins and their annotated locations for XP_002501484.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C1E4L9
    Conserved Domains (1) summary
    COG3934
    Location:97 → 474
    COG3934; Endo-1,4-beta-mannosidase [Carbohydrate transport and metabolism]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials