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EMB1080 Nucleic acid-binding, OB-fold-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824054, updated on 11-Oct-2018

Summary

Gene symbol
EMB1080
Gene description
Nucleic acid-binding, OB-fold-like protein
Primary source
Araport:AT3G48930
Locus tag
AT3G48930
Gene type
protein coding
RNA name
Nucleic acid-binding, OB-fold-like protein
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
embryo defective 1080

Genomic context

See EMB1080 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Sequence:
Chromosome: 3; NC_003074.8 (18140771..18142281, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene membrane-associated progesterone binding protein 3 Neighboring gene single-stranded DNA endonuclease family protein Neighboring gene myb domain protein 45 Neighboring gene Remorin family protein Neighboring gene Pectin lyase-like superfamily protein

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

  • Homologs of the EMB1080 gene: The EMB1080 gene is conserved in human, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, rice, and frog.
  • Orthologs
NM_114752.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
mRNA binding IDA
Inferred from Direct Assay
more info
PubMed 
rRNA binding IEA
Inferred from Electronic Annotation
more info
 
structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
structural constituent of ribosome ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Process Evidence Code Pubs
embryo development ending in seed dormancy NAS
Non-traceable Author Statement
more info
 
translation IEA
Inferred from Electronic Annotation
more info
 
translation ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Component Evidence Code Pubs
cell wall IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm ISM
Inferred from Sequence Model
more info
 
cytosol IDA
Inferred from Direct Assay
more info
PubMed 
cytosolic ribosome IDA
Inferred from Direct Assay
more info
PubMed 
cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosolic small ribosomal subunit IDA
Inferred from Direct Assay
more info
PubMed 
cytosolic small ribosomal subunit ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
membrane IDA
Inferred from Direct Assay
more info
PubMed 
plasmodesma IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
Nucleic acid-binding, OB-fold-like protein
NP_190462.1
  • embryo defective 1080 (EMB1080); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S17, archaeal (InterPro:IPR019978), Ribosomal protein S17, conserved site (InterPro:IPR019979), Ribosomal protein S17 (InterPro:IPR000266); BEST Arabidopsis thaliana protein match is: ribosomal protein S11-beta (TAIR:AT5G23740.1); Has 1290 Blast hits to 1288 proteins in 469 species: Archae - 240; Bacteria - 242; Metazoa - 305; Fungi - 148; Plants - 140; Viruses - 0; Other Eukaryotes - 215 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    18140771..18142281 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_114752.3NP_190462.1  Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190462.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P16181
    UniProtKB/TrEMBL
    A0A178VH97
    Conserved Domains (3) summary
    COG0186
    Location:62144
    RpsQ; Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]
    PTZ00241
    Location:1155
    PTZ00241; 40S ribosomal protein S11; Provisional
    pfam16205
    Location:472
    Ribosomal_S17_N; Ribosomal_S17 N-terminal
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