Format

Send to:

Choose Destination

PYE basic helix-loop-helix (bHLH) DNA-binding superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 823918, updated on 18-Apr-2019

Summary

Gene symbol
PYE
Gene description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Primary source
Araport:AT3G47640
Locus tag
AT3G47640
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
POPEYE
Summary
Encodes POPEYE (PYE), a bHLH transcription factor regulating response to iron deficiency in Arabidopsis roots.

Genomic context

See PYE in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Sequence:
Chromosome: 3; NC_003074.8 (17567126..17569394)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 Neighboring gene translocator assembly/maintenance protein Neighboring gene DnaJ/Hsp40 cysteine-rich domain superfamily protein Neighboring gene Regulator of chromosome condensation (RCC1) family protein Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_001203101.1
NM_114632.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 
DNA-binding transcription factor activity IDA
Inferred from Direct Assay
more info
PubMed 
DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
cellular response to iron ion starvation IMP
Inferred from Mutant Phenotype
more info
PubMed 
iron ion homeostasis IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of transcription, DNA-templated TAS
Traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
NP_001190029.1
  • POPEYE (PYE); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: cellular response to iron ion starvation, iron ion homeostasis, regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G36060.1).
NP_001190030.1
  • POPEYE (PYE); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: cellular response to iron ion starvation, iron ion homeostasis, regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G36060.1).
NP_190348.1
  • POPEYE (PYE); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: cellular response to iron ion starvation, iron ion homeostasis, regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G36060.1); Has 345 Blast hits to 345 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 0; Plants - 321; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    17567126..17569394
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203100.1NP_001190029.1  basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190029.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SN74
    Conserved Domains (1) summary
    smart00353
    Location:3483
    HLH; helix loop helix domain
  2. NM_001203101.1NP_001190030.1  basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190030.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SN74
    Conserved Domains (1) summary
    smart00353
    Location:3483
    HLH; helix loop helix domain
  3. NM_114632.4NP_190348.1  basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190348.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SN74
    Conserved Domains (1) summary
    smart00353
    Location:3483
    HLH; helix loop helix domain
Support Center